Locus 2858

Sequence ID X_DroMel_CAF1
Location 7,633,119 – 7,633,210
Length 91
Max. P 0.516832
window4687

overview

Window 7

Location 7,633,119 – 7,633,210
Length 91
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 77.36
Mean single sequence MFE -19.18
Consensus MFE -13.83
Energy contribution -14.22
Covariance contribution 0.39
Combinations/Pair 1.15
Mean z-score -0.91
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.516832
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7633119 91 - 22224390
GUUGGAGAAGGCCAAAAAA-----------GCAA-GAACGGGAAAAAU--GGAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA
.((((......))))..((-----------((..-((((..((((((.--(....))))))).........(((..((((.....)))))))..))))..)))). ( -21.70)
>DroVir_CAF1 98956 96 - 1
GGCCAAAAGAUC---UCAGCCGCA------AUGUGAAGCGAAAAAAAAAAAGAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA
(((.........---...)))...------..(((((((((((((...........)))))).........(((..((((.....)))))))..)))).)))... ( -16.10)
>DroPse_CAF1 83279 85 - 1
GCUCGAGGAAUCAA-------------------A-GAGGGGAAAAAAUAAGAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA
..............-------------------.-(((.(((((......((((....)))).........(((..((((.....)))))))...))))).))). ( -16.30)
>DroEre_CAF1 55775 102 - 1
GUUGAAGAAGGCCAAAAAACGAGAACGGGAACGG-GAACGGGAAAAAU--GAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA
........((((..............(....)((-((((.((((((.(--....).)))))).........(((..((((.....)))))))..)))))))))). ( -21.20)
>DroYak_CAF1 52971 92 - 1
GUUGAAGAAGGCCAACAAAC----------ACAA-GAGCGGGAAAAAU--GAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA
((((........))))....----------....-(((((((((...(--((((....)))))........(((..((((.....)))))))...))))))))). ( -23.50)
>DroPer_CAF1 67431 85 - 1
GCUCGAGGAAUCAA-------------------A-GAGGGGAAAAAAUAAGAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA
..............-------------------.-(((.(((((......((((....)))).........(((..((((.....)))))))...))))).))). ( -16.30)
>consensus
GUUCAAGAAAGCCA__AAA___________AC_A_GAGCGGAAAAAAU__GAAAACUUUUUCAAUAUUUUACGAAUCAGGUGUUUCCUGUCGAAGUUUCCGCUUA
...................................(((((((((......((((....)))).........(((..((((.....)))))))...))))))))). (-13.83 = -14.22 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:12 2006