Locus 2857

Sequence ID	X_DroMel_CAF1
Location	7,631,292 – 7,631,403
Length	111
Max. P	0.863796

overview

Window 5

Location	7,631,292 – 7,631,382
Length	90
Sequences	6
Columns	99
Reading direction	reverse
Mean pairwise identity	78.43
Mean single sequence MFE	-22.81
Consensus MFE	-12.75
Energy contribution	-13.75
Covariance contribution	1.00
Combinations/Pair	1.29
Mean z-score	-1.89
Structure conservation index	0.56
SVM decision value	0.44
SVM RNA-class probability	0.738091
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7631292 90 - 22224390
UCC-----UGC-C-AAAGAUUAAAUGUUUGCCAGGGCAAAGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAUAAAGUGGCCCACAGGGU-CA-
...-----...-.-.((((((((((...((((((((((((.........))))))))))))....)))))))))).......((((((...))))-))- ( -33.20)
>DroPse_CAF1 81151 96 - 1
UUGGUAGAUGAGA-AGAGAUUAUAUGUUUACUUG-GCAAAGAAAAUUAAUUUGCUCGAGCAUUAGGUUGGAUUUUAAUAAAGUGGCCCACCGGGCACA-
........(((((-...((((..((((((....(-(((((.........)))))).))))))..))))...))))).....(((.((....)).))).- ( -16.70)
>DroGri_CAF1 137545 91 - 1
-----AGAGGGGAAGAAGAUUAAAUGUUUACUUGG-UCAAGAAAAUUAAUUUGCUUGCGCAUUACGUUUGAUUUUAAUAAAGUGUCGC--CGGGUUGAA
-----...((.((..((((((((((((.....(((-.((((.(((....))).))))).))..)))))))))))).........)).)--)........ ( -15.50)
>DroEre_CAF1 53906 90 - 1
UCC-----UGC-C-AAAGAUUAAAUGUUUGCCCGGGCAAAGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAUAAAGUGGCCCACAGGGU-CA-
...-----...-.-.((((((((((...((((.(((((((.........))))))).))))....)))))))))).......((((((...))))-))- ( -29.40)
>DroYak_CAF1 51057 90 - 1
UCC-----UGC-C-AAAGAUUAAAUGUUUGCCAGGGCCAAGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAUAAAGUGGCCCACAGCGC-CA-
...-----.((-(-(((((((((((...(((((((((.((.........)).)))))))))....)))))))))).......)))).........-..- ( -25.91)
>DroPer_CAF1 65293 96 - 1
UUGGUAGAUGAGA-AGAGAUUAUAUGUUUACUUG-GCAAAGAAAAUUAAUUUGCUCGAGCAUUAGGUUGGAUUUUAAUAAAGUGGACCACCGGGCACA-
(((((.((((...-.(((.......((((.(((.-...))).)))).......)))...)))).((((.(.(((....))).).))))))))).....- ( -16.14)
>consensus
UCC_____UGC_A_AAAGAUUAAAUGUUUACCUGGGCAAAGAAAAUUAAUUUGCCUGGGCAUUAAGUUUGAUUUUAAUAAAGUGGCCCACAGGGC_CA_
...............((((((((((.....((((((((((.........))))))))))......)))))))))).........((((...)))).... (-12.75 = -13.75 +   1.00)

alignment

secondary structure

dotplot

Window 6

Location	7,631,311 – 7,631,403
Length	92
Sequences	6
Columns	99
Reading direction	reverse
Mean pairwise identity	80.32
Mean single sequence MFE	-22.54
Consensus MFE	-16.37
Energy contribution	-16.98
Covariance contribution	0.61
Combinations/Pair	1.19
Mean z-score	-1.86
Structure conservation index	0.73
SVM decision value	0.84
SVM RNA-class probability	0.863796
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7631311 92 - 22224390
UGUCCAGGGGCCUAAAACUAUUCC-----UGC-CAAAGAUUAAAUGUUUGCCAGGGCAA-AGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAU
....((((((..........))))-----)).-..((((((((((...(((((((((((-(.........))))))))))))....))))))))))... ( -30.30)
>DroPse_CAF1 81171 97 - 1
GGACCCCCAUCUCGAAACUAUUUGGUAGAUGAGAAGAGAUUAUAUGUUUACUUG-GCAA-AGAAAAUUAAUUUGCUCGAGCAUUAGGUUGGAUUUUAAU
.((((.....(((((........(((((((...............)))))))..-((((-(.........)))))))))).....)))).......... ( -15.66)
>DroSim_CAF1 49955 93 - 1
UGUCCAGGGGCCUAAAACUAUUCC-----UGC-CAAAGAUUAAAUGUUUGCCAGGCCAAAAGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAU
....((((((..........))))-----)).-..((((((((((...(((((((.((((..........)))).)))))))....))))))))))... ( -22.30)
>DroEre_CAF1 53925 92 - 1
UGUCCAGAGGGCCAAAACUAUUCC-----UGC-CAAAGAUUAAAUGUUUGCCCGGGCAA-AGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAU
.........(((............-----.))-).((((((((((...((((.((((((-(.........))))))).))))....))))))))))... ( -25.12)
>DroYak_CAF1 51076 92 - 1
UGUCCAGGGGCCUAAAACUAUUCC-----UGC-CAAAGAUUAAAUGUUUGCCAGGGCCA-AGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAU
....((((((..........))))-----)).-..((((((((((...(((((((((.(-(.........)).)))))))))....))))))))))... ( -26.20)
>DroPer_CAF1 65313 97 - 1
GGACCCCCAUCUCGAAACUAUUUGGUAGAUGAGAAGAGAUUAUAUGUUUACUUG-GCAA-AGAAAAUUAAUUUGCUCGAGCAUUAGGUUGGAUUUUAAU
.((((.....(((((........(((((((...............)))))))..-((((-(.........)))))))))).....)))).......... ( -15.66)
>consensus
UGUCCAGGGGCCCAAAACUAUUCC_____UGC_CAAAGAUUAAAUGUUUGCCAGGGCAA_AGAAAAUUAAUUUGCCUUGGCAUUAAGUUUGAUUUUAAU
...................................((((((((((...(((((((((((............)))))))))))....))))))))))... (-16.37 = -16.98 +   0.61)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:11 2006