Locus 2856

Sequence ID X_DroMel_CAF1
Location 7,630,477 – 7,630,576
Length 99
Max. P 0.839385
window4684

overview

Window 4

Location 7,630,477 – 7,630,576
Length 99
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.71
Mean single sequence MFE -22.29
Consensus MFE -12.90
Energy contribution -14.49
Covariance contribution 1.59
Combinations/Pair 1.09
Mean z-score -2.02
Structure conservation index 0.58
SVM decision value 0.74
SVM RNA-class probability 0.839385
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7630477 99 - 22224390
CCA-GUU--GAUACGAGAAAAAGGCUAAGGGAGAAGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC----GAAAAAAAUGUAUUGCA
...-(((--((..(........)......((....((((((((.....----------))))))))...))....)))))..((((((((.....----........)))))))). ( -22.02)
>DroSec_CAF1 47127 99 - 1
CCA-GUU--GAUACGAGAAAAAGGCUAAGGGAGGAGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC----GAAAAAAAUGUAUUGCA
...-(((--((..(........).........((.((((((((.....----------))))))))...))....)))))..((((((((.....----........)))))))). ( -22.22)
>DroSim_CAF1 49158 99 - 1
CCA-GUU--GAUACGAGAAAAAGGCUAAGGGAGGAGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC----GAAAAAAAUGUAUUGCA
...-(((--((..(........).........((.((((((((.....----------))))))))...))....)))))..((((((((.....----........)))))))). ( -22.22)
>DroEre_CAF1 53143 97 - 1
CAA-GUU--GAGACGAGAAAACGGCUAGGGA-AGGGUGCCAAAAUAAA----------UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC-----GAAAAAAUCUAUUGCA
...-(((--(((.((......))....((..-.(.((((((((.....----------)))))))).).))...))))))..((((((.......-----.........)))))). ( -25.19)
>DroYak_CAF1 50219 103 - 1
CAA-GUU--GAUACGAGAAAAAGGCCGAGGACGGGGUGCCAAAAUAUA----------UUUGGCACGCGCCACACUCAAUAAGCCAUAUAAAUCGCCAAAAAAAAAAUGUAUUCCA
...-...--....(((......(((.(((...(((((((((((.....----------)))))))).).))...))).....))).......)))..................... ( -21.02)
>DroPer_CAF1 64506 101 - 1
GCAAGCAAGGAUUGGAAAAGGAGGC-----------UGACAGAAUGGAUGGCGUGGCGUUUGGCACGCGCCGCACCCAAUAAGCAAUAUAAAUUC----CUAAAAAGUAUAUUUGA
((.(((.....((....))....))-----------).......(((.(((((((((.....)).)))))))...)))....))...........----................. ( -21.10)
>consensus
CCA_GUU__GAUACGAGAAAAAGGCUAAGGGAGGAGUGCCAAAAUAAA__________UUUGGCACGCGCCACACUCAAUAAGCAAUAUAAAUCC____GAAAAAAAUGUAUUGCA
..............(((.....(((........(.((((((((...............)))))))).))))...))).....((((((((.................)))))))). (-12.90 = -14.49 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006