Locus 2833

Sequence ID X_DroMel_CAF1
Location 7,562,265 – 7,562,356
Length 91
Max. P 0.737724
window4651

overview

Window 1

Location 7,562,265 – 7,562,356
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.00
Mean single sequence MFE -19.27
Consensus MFE -10.92
Energy contribution -11.25
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.57
SVM decision value 0.44
SVM RNA-class probability 0.737724
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7562265 91 - 22224390
--------------ACAUGGACA----G---------AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGCUGUAACGUUAACACCACAACGCCAUGUCACCAACAA--ACC
--------------((((((.(.----.---------...((((....))))........(((((..(((((.....)))))...))))).........))))))).........--... ( -18.70)
>DroPse_CAF1 120630 96 - 1
--------------ACACGCACGCACACAUCCUGCAAAGAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUAACGUUAACACCACAACGACAUGUCACU----------
--------------....((..(((.......))).....((((....))))...............))........(((((..((((........))))..)))))...---------- ( -16.20)
>DroSec_CAF1 54652 91 - 1
--------------ACAUGGACA----G---------AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGCUGUAACGUUAACACCACAACGCCAUGUCACCAACAA--GCC
--------------((((((.(.----.---------...((((....))))........(((((..(((((.....)))))...))))).........))))))).........--... ( -18.70)
>DroYak_CAF1 56314 93 - 1
--------------ACAUGGACG----G---------AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGCUGUAACGUUAACACCACAACGCCAUGUCACCAACAAAAACG
--------------((((((.((----.---------...((((....))))........(((((..(((((.....)))))...)))))........)))))))).............. ( -20.90)
>DroAna_CAF1 59165 116 - 1
UGCCCUCCACACGCACAUGGACACUCGG--AGAGCCACAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUACCGUUAACACCACUGCGACAUGUCACCAACAA--GCC
.((..((((........)))).....((--.(((((((.........))))).............(((((((..((((......))))......)))))))....)).)).....--)). ( -24.90)
>DroPer_CAF1 127705 96 - 1
--------------ACACGCACGCACACAUCCUGCAAAGAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUAACGUUAACACCACAACGACAUGUCACU----------
--------------....((..(((.......))).....((((....))))...............))........(((((..((((........))))..)))))...---------- ( -16.20)
>consensus
______________ACAUGGACA____G_________AAAGCCACAAGUGGCACAUUAUUUUAAUUCGCAGUCAAACGAUGUAACGUUAACACCACAACGACAUGUCACCAACAA___CC
..............(((((.....................((((....))))......................((((......)))).............))))).............. (-10.92 = -11.25 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006