Locus 283

Sequence ID X_DroMel_CAF1
Location 956,643 – 956,773
Length 130
Max. P 0.996126
window430 window431

overview

Window 0

Location 956,643 – 956,745
Length 102
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 80.75
Mean single sequence MFE -37.90
Consensus MFE -27.95
Energy contribution -29.40
Covariance contribution 1.45
Combinations/Pair 1.09
Mean z-score -3.10
Structure conservation index 0.74
SVM decision value 2.66
SVM RNA-class probability 0.996126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 956643 102 - 22224390
--------ACUCGUAACUGGUAACUGGUGGCUGGUAACUGGUAACUGGUAACCGGUAACCGGUAACAGUUAACUGGGUGCAGUCACUGAAUCCGAAAGGGUUGGCUAUGG
--------....(((.(..(((((((...((((((.((((((........)))))).))))))..))))).))..).)))(((((....((((....))))))))).... ( -40.60)
>DroEre_CAF1 48020 88 - 1
--------ACUCGUAACUGGUGAC--------------UGGUAACUGGCAACUGGUAGCCGGUAACAGUUAACUGGGUGCAGUCACUGAAUCCGCAAGGGUUGGCUAUGG
--------...((((.((((((((--------------((...((((((........))))))..(((....)))....)))))))).(((((....))))))).)))). ( -33.20)
>DroYak_CAF1 42578 110 - 1
AACUCGCAACUCGUAACUGGUGACUGGUGACUGGUUACUGGUAACUGGUAACUGGUAGUCGGUAACAGUUAACUGGGUGCAGUGACUGAAUCCGAAGGGGUUGGCUAUGG
.(((.(((.(((.((((((...(((((..((..(((((..(...)..)))))..))..)))))..))))))...))))))))).....(((((....)))))........ ( -39.90)
>consensus
________ACUCGUAACUGGUGACUGGUG_CUGGU_ACUGGUAACUGGUAACUGGUAGCCGGUAACAGUUAACUGGGUGCAGUCACUGAAUCCGAAAGGGUUGGCUAUGG
............((.((..((.((((((((....)))))))).))..)).))(.((((((.....((((..((((....)))).))))(((((....))))))))))).) (-27.95 = -29.40 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 956,676 – 956,773
Length 97
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 69.59
Mean single sequence MFE -35.13
Consensus MFE -18.32
Energy contribution -19.00
Covariance contribution 0.68
Combinations/Pair 1.20
Mean z-score -2.32
Structure conservation index 0.52
SVM decision value 2.19
SVM RNA-class probability 0.989987
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 956676 97 - 22224390
UCCCCUCUCUUCUCCCCCGUCAACUGUA--------------ACUCGUAACUGGUAACUGGUGGCUGGUAACUGGUAACUGGUAACCGGUAACCGGUAACAGUUAACUGGG
..............(((.((.((((((.--------------(((.((.((((((.((..((.((..(...)..)).))..)).)))))).)).))).)))))).)).))) ( -35.90)
>DroEre_CAF1 48053 82 - 1
UCCCCUGCCUCCCGCCCC-CGAGCUGCA--------------ACUCGUAACUGGUGAC--------------UGGUAACUGGCAACUGGUAGCCGGUAACAGUUAACUGGG
..........(((.....-((((.....--------------.))))((((((...((--------------((((.((((....).))).))))))..))))))...))) ( -26.60)
>DroYak_CAF1 42611 111 - 1
UUCCCCACCUCCAGCCCCUUGAGUUGCAACUGGCAACUCGCAACUCGUAACUGGUGACUGGUGACUGGUUACUGGUAACUGGUAACUGGUAGUCGGUAACAGUUAACUGGG
..........((((......(((((((....(....)..))))))).((((((...(((((..((..(((((..(...)..)))))..))..)))))..)))))).)))). ( -42.90)
>consensus
UCCCCUACCUCCAGCCCC_UGAGCUGCA______________ACUCGUAACUGGUGACUGGUG_CUGGU_ACUGGUAACUGGUAACUGGUAGCCGGUAACAGUUAACUGGG
..............(((....(((((.......................((..((.((((((((....)))))))).))..)).(((((...)))))..)))))....))) (-18.32 = -19.00 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:47 2006