Locus 2824

Sequence ID X_DroMel_CAF1
Location 7,551,614 – 7,551,706
Length 92
Max. P 0.995732
window4635

overview

Window 5

Location 7,551,614 – 7,551,706
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.61
Mean single sequence MFE -16.56
Consensus MFE -14.04
Energy contribution -14.12
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -2.31
Structure conservation index 0.85
SVM decision value 2.61
SVM RNA-class probability 0.995732
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7551614 92 + 22224390
UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAAAAAACCAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU
...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... ( -16.60)
>DroSec_CAF1 44243 92 + 1
UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAGAAAAACAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU
...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... ( -16.60)
>DroSim_CAF1 43556 92 + 1
UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAGAAAAACAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU
...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... ( -16.60)
>DroEre_CAF1 55537 85 + 1
AUUAACGAAA-------ACGUGUGUGUUCGAAAAUAGAACACUCAUACACAGAAAAACAAAGCAGAAGCUCAAGUAGAAGCAGCUGAAAAAU
..........-------..((((((((((.......))))))....))))............(((..(((........)))..)))...... ( -15.70)
>DroYak_CAF1 45351 92 + 1
AUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCGCACACAGAAAAACAAAGCUGAAGCUCAUGUAGAAGCAGCUGAAAAAU
...................(((((((.((..........))..)))))))..........(((((...((.....))...)))))....... ( -17.30)
>consensus
UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAGAAAAACAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU
...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... (-14.04 = -14.12 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006