Locus 2822

Sequence ID X_DroMel_CAF1
Location 7,549,597 – 7,549,698
Length 101
Max. P 0.910769
window4633

overview

Window 3

Location 7,549,597 – 7,549,698
Length 101
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 72.35
Mean single sequence MFE -36.95
Consensus MFE -12.39
Energy contribution -11.70
Covariance contribution -0.69
Combinations/Pair 1.44
Mean z-score -2.35
Structure conservation index 0.34
SVM decision value 1.07
SVM RNA-class probability 0.910769
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7549597 101 + 22224390
UUUCGCUUGCUUCCAGUUUCC----AAUUUUCCCGUCUUCCAAGCGGGGG--GCGUGAAAAGAAGU-----GGAAAUAACAGAAGCAGCAGCAGCA---ACAACAUA---GCGGGGGA
(..((((((((((..((((((----(.(((((.((((((((....)))))--))).)))))....)-----))))))....))))))((....)).---.......)---)))..).. ( -38.60)
>DroPse_CAF1 102261 114 + 1
UUUUGCUUAGUUUUUGUUUGUUGGUGAUUGUUCUACCU--CGUGCGGGCAAUGCGACAAAUGCAGUACGGGGGGCGUCACAGGAGCAAGAACA--AACCACAAGGCAGACGCGGGGGA
.....((..((.(((((((..((((..(((((((.(((--(((((..(((.(......).))).)))))))).((.((....)))).))))))--)))))..))))))).))..)).. ( -37.70)
>DroSec_CAF1 42295 103 + 1
UUUCGCUUGCUUCCAGUUUCC----AAUUUUCCCGUCUUCCAAGCGGGGG--GCGUAAAAAGAAGU-----GGAAAUAACAGAAGCAGCAGCAACAACAACAACAUA---GCGGGGG-
(..((((((((((..((((((----(.((((..((((((((....)))))--)))..))))....)-----))))))....))))))...................)---)))..).- ( -32.80)
>DroEre_CAF1 53490 101 + 1
UUUCGCUUGCUUCCAGUUUCC----AGUUUUCCCGUUUUCCAAGCGGGGG--GCGUGAAA---AGU-----GGAAAUAACAGAAGCAGCAGCAGCAACAACAACAUA---GCGGGGGA
(..((((((((((..((((((----(.(((((.((((..((....))..)--))).))))---).)-----))))))....))))))((....))...........)---)))..).. ( -39.90)
>DroYak_CAF1 43306 104 + 1
UUUCGCUUGCUUCCAGUUUCC----AAUUUUCCCGUUUUCCAAGCGGGGG--GCGUGAAAAGAAGU-----GGAAAUAACAGAAGCAGCAGCAGCAACAACAACAUA---GCGGGGGA
(..((((((((((..((((((----(.(((((.((((..((....))..)--))).)))))....)-----))))))....))))))((....))...........)---)))..).. ( -37.00)
>DroPer_CAF1 108146 114 + 1
UUUUGCUUAGUUUUCGUUUGUUGGUGAUUGUUCUACCU--CGUGCGGGCAAUGCGACAAAUGCAGUACGGGGGGCGUCACAGGAGCAAGAACA--AACCACAAGGCAGACGCGGGGGA
..........((..(((((((..(((.(((((((.(((--(((((..(((.(......).))).)))))))).((.((....)))).))))))--)..)))...)))))))..))... ( -35.70)
>consensus
UUUCGCUUGCUUCCAGUUUCC____AAUUUUCCCGUCUUCCAAGCGGGGG__GCGUGAAAAGAAGU_____GGAAAUAACAGAAGCAGCAGCAGCAACAACAACAUA___GCGGGGGA
(..((((((((((..((((((.....((((((((((.......))))).............))))).....))))))....)))))))......................)))..).. (-12.39 = -11.70 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:24 2006