Locus 2803

Sequence ID X_DroMel_CAF1
Location 7,487,343 – 7,487,452
Length 109
Max. P 0.998663
window4592

overview

Window 2

Location 7,487,343 – 7,487,452
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.60
Mean single sequence MFE -24.84
Consensus MFE -21.74
Energy contribution -22.18
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.68
Structure conservation index 0.88
SVM decision value 3.18
SVM RNA-class probability 0.998663
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7487343 109 + 22224390
AAUUU-UCGCUCUCAUUAGACAGGCACA----------CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG
.....-.(((.(.((((((((((.(((.----------.......................((((.......)))).......(((((........)))))))))))))))))).).))) ( -25.00)
>DroSec_CAF1 20370 109 + 1
AAUUU-UCGCUCUCAUUAGACAGGCACA----------CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG
.....-.(((.(.((((((((((.(((.----------.......................((((.......)))).......(((((........)))))))))))))))))).).))) ( -25.00)
>DroSim_CAF1 22368 109 + 1
AAUUU-UCGCUCUCAUUAGACAGGCACA----------CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG
.....-.(((.(.((((((((((.(((.----------.......................((((.......)))).......(((((........)))))))))))))))))).).))) ( -25.00)
>DroEre_CAF1 21386 109 + 1
AAUUUUCCGCUCUCAUUAGACAGGCAC-----------CACAUAUCUAUAUUUAACCCCUUGUAGCCUUCUGCCACUCGCAUAAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG
.......(((.(.(((((((((((((.-----------.......(((((..........))))).....))))....((((((.(((........)))))))))))))))))).).))) ( -27.62)
>DroYak_CAF1 23950 109 + 1
AAUUUUUCGCUCUCAUUAGACAGGCACACACACACACACACAUAUCUAUGCUUAACCCCUUGUAGCCAUCUUCU-----------GCUUUAUCUUAGGCUUGUGCUGCUUAAUGUGUGUG
........(((.((....))..))).......(((((((((((....)))...........(((((((......-----------((((......)))).)).)))))....)))))))) ( -21.60)
>consensus
AAUUU_UCGCUCUCAUUAGACAGGCACA__________CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG
.......(((.(.((((((((((.(((..................(((((..........)))))..................(((((........)))))))))))))))))).).))) (-21.74 = -22.18 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:47 2006