| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,475,692 – 7,475,790 |
| Length | 98 |
| Max. P | 0.668115 |
| Location | 7,475,692 – 7,475,790 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 93.94 |
| Mean single sequence MFE | -18.44 |
| Consensus MFE | -16.68 |
| Energy contribution | -16.35 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.668115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7475692 98 + 22224390 CAGGAUUUGCU-GAUGCUGAGGCUUCCUUUUACCUCCAUUUUUCGCCCCCUCCCCAUUUCCAUUCGCAUUUCCACUGCCAUUCGAGUUUCAGCUGGCUC ..(((..(((.-((((..((((..........))))........(....)..........)))).)))..)))...((((...(.....)...)))).. ( -15.60) >DroSec_CAF1 8934 99 + 1 CAGGAUUUGCUGGAUGCUGAGGCUUCCUUCCACCUCCAUUUUCCACCCCCUCCCCAUUUCCAUUCGCAUUUCCACUGCCAUUCGAGCUUCAGCUGGCUC ..(((..(((((((((..((((..........................))))..))..))))...)))..)))..........(((((......))))) ( -20.37) >DroEre_CAF1 9629 99 + 1 CAGGAUUUGCUGGAUACUGAGGCUUCCUUCCACCUCCAUUUUCCACCUCCUCCCCAUUUCCCUUCGCAUUUCCACUGCCAUUCGAGCUUCAGCUGGCUC ..(((..(((((((....((((..........)))).....))))....................)))..)))..........(((((......))))) ( -19.35) >consensus CAGGAUUUGCUGGAUGCUGAGGCUUCCUUCCACCUCCAUUUUCCACCCCCUCCCCAUUUCCAUUCGCAUUUCCACUGCCAUUCGAGCUUCAGCUGGCUC ..(((..(((((((....((((..........)))).....))))....................)))..)))..........(((((......))))) (-16.68 = -16.35 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:14 2006