Locus 2775

Sequence ID X_DroMel_CAF1
Location 7,467,634 – 7,467,739
Length 105
Max. P 0.794734
window4530

overview

Window 0

Location 7,467,634 – 7,467,739
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 99.53
Mean single sequence MFE -25.55
Consensus MFE -25.17
Energy contribution -25.18
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.99
SVM decision value 0.60
SVM RNA-class probability 0.794734
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7467634 105 - 22224390
UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG-GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA
..(((...(((((....((((((((..(((.......((((..(.((((.((.....-)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.50)
>DroSec_CAF1 948 105 - 1
UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG-GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA
..(((...(((((....((((((((..(((.......((((..(.((((.((.....-)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.50)
>DroSim_CAF1 2649 105 - 1
UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG-GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA
..(((...(((((....((((((((..(((.......((((..(.((((.((.....-)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.50)
>DroEre_CAF1 1125 106 - 1
UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUGGGCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA
..(((...(((((....((((((((..(((.......((((..(.((((.((......)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.70)
>consensus
UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG_GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA
..(((...(((((....((((((((..(((.......((((..(.((((.((......)).)))).)..)))).....)))..))))))))....)))))...))) (-25.17 = -25.18 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:52 2006