Locus 2773

Sequence ID X_DroMel_CAF1
Location 7,466,584 – 7,466,680
Length 96
Max. P 0.729201
window4528

overview

Window 8

Location 7,466,584 – 7,466,680
Length 96
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.35
Mean single sequence MFE -23.00
Consensus MFE -20.06
Energy contribution -19.88
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.87
SVM decision value 0.42
SVM RNA-class probability 0.729201
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7466584 96 + 22224390
GACUCG--------------------C----CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA
(((...--------------------(----((((.....((.((((..........))))..))......)))))((.((((((((((...)))))))))).))...........))). ( -23.50)
>DroSim_CAF1 1599 96 + 1
GACUCG--------------------C----CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA
(((...--------------------(----((((.....((.((((..........))))..))......)))))((.((((((((((...)))))))))).))...........))). ( -23.50)
>DroEre_CAF1 84 96 + 1
GACUCC--------------------C----CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA
(((...--------------------(----((((.....((.((((..........))))..))......)))))((.((((((((((...)))))))))).))...........))). ( -23.60)
>DroYak_CAF1 1836 120 + 1
UACUCCACCCCCCCAACCCCCUUUCCCCGCUUGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA
..............(((.....(((...(((((((.....((.((((..........))))..))......))))))).((((((((((...))))))))))......))).....))). ( -21.40)
>consensus
GACUCC____________________C____CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA
...............................(((...(((....................((.........)).((((.((((((((((...)))))))))).)))).)))...)))... (-20.06 = -19.88 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:50 2006