Locus 2746

Sequence ID X_DroMel_CAF1
Location 7,384,728 – 7,384,820
Length 92
Max. P 0.680295
window4487

overview

Window 7

Location 7,384,728 – 7,384,820
Length 92
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 88.38
Mean single sequence MFE -37.00
Consensus MFE -23.76
Energy contribution -24.20
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -2.61
Structure conservation index 0.64
SVM decision value 0.30
SVM RNA-class probability 0.680295
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7384728 92 + 22224390
CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGACAAGAAAAAGAUGGUG--------------GUGGAAGUGGCGGGGCCAAAAGGG
(((((((((..(((...((((((..((...(((((((.........))))))).))..))))))...)--------------))..)))))))))..((....)). ( -37.40)
>DroSec_CAF1 133592 92 + 1
CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGCCAAGAAAAAGAUGGUG--------------GUGUAAGUGGCGGGCCCAAAAGGG
((((((((((.(((...((((((..(((.(((.((((.........))))))))))..))))))...)--------------)).)))))))))).(((....))) ( -42.30)
>DroSim_CAF1 133463 92 + 1
CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGCCAAGAAAAAGAUGGUG--------------GUGGAAGUGGCGGGGCCAAAAGGG
(((((((((..(((...((((((..(((.(((.((((.........))))))))))..))))))...)--------------))..)))))))))..((....)). ( -37.40)
>DroEre_CAF1 146446 104 + 1
CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCUGGCCAAGAAAAAGAUGGUGGUGUGCCAGUGGUGGUGGGAG--GGGGGGCUAAAAGGG
(..(((((.(((((..(((.....)))..)))))((.((((.((.((((...........)))).)).)))).))...)))))..)...--............... ( -30.90)
>consensus
CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGCCAAGAAAAAGAUGGUG______________GUGGAAGUGGCGGGGCCAAAAGGG
((((((((((((((..(((.....)))..)))))(((.........))).((((.........))))...................)))))))))..((....)). (-23.76 = -24.20 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:15 2006