Locus 2739

Sequence ID X_DroMel_CAF1
Location 7,360,784 – 7,360,874
Length 90
Max. P 0.577795
window4476

overview

Window 6

Location 7,360,784 – 7,360,874
Length 90
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 76.81
Mean single sequence MFE -20.66
Consensus MFE -11.58
Energy contribution -12.51
Covariance contribution 0.93
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 0.56
SVM decision value 0.09
SVM RNA-class probability 0.577795
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7360784 90 + 22224390
AUCUCAUUGGCCAGUUAGCCAGUCAUCC-------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA
.....((((((.((.(((((((......-------------------..)))))))...))....)))))).....((((((...................)))))).. ( -19.81)
>DroSec_CAF1 109583 90 + 1
AUCACGUUGGUCAGUUAGCCAGUCAUCC-------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA
....(((.(((..(((.(((((......-------------------.((((((...........))))))......))))))))....))).)))............. ( -19.82)
>DroSim_CAF1 109480 90 + 1
AUCACGUUGGUCAGUUAGCCAGUCAUCC-------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA
....(((.(((..(((.(((((......-------------------.((((((...........))))))......))))))))....))).)))............. ( -19.82)
>DroEre_CAF1 121062 82 + 1
AUCUCGCUGGCCAGUUAUCC---------------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA
.....((((.((((......---------------------------.((((((...........))))))......)))))))).........(((.....))).... ( -21.22)
>DroYak_CAF1 142528 109 + 1
AUCUCGUUGGCCAGUUGGCCAGUUAGCCAGUUAGCCAGUUAUCCCGAAGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA
..((..((((((....))))))..))((((.((((((..(.......)..)))))).)).(((((((((.........)))))).)))................))... ( -28.30)
>DroAna_CAF1 119982 69 + 1
AUUGCUUUCG---------------CCC-------------------CGUUCGCU---CCGUUCUGCCAAUAAAAAUCUGGCAGCAAAAAAUU---AAAGCGUCGGAAG
..........---------------..(-------------------((..((((---..(((((((((.........)))))).....))).---..)))).)))... ( -15.00)
>consensus
AUCUCGUUGGCCAGUUAGCCAGUCAUCC___________________AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA
.......((((......))))...........................((((((...........)))))).....((((((...................)))))).. (-11.58 = -12.51 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:05 2006