Locus 2732

Sequence ID X_DroMel_CAF1
Location 7,333,178 – 7,333,277
Length 99
Max. P 0.917422
window4469

overview

Window 9

Location 7,333,178 – 7,333,277
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.00
Mean single sequence MFE -27.80
Consensus MFE -19.36
Energy contribution -19.20
Covariance contribution -0.16
Combinations/Pair 1.24
Mean z-score -1.65
Structure conservation index 0.70
SVM decision value 1.11
SVM RNA-class probability 0.917422
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7333178 99 - 22224390
GGUCAUCGGUUGUCCUUUCUUCUCGACGCAUUGACCCAA--GCAUCUAGAUUUGCGGCCA-AAGUUAGCGUUUGACAUUUAUGCCGGAUGUCAAGUUGUCCC
((((.(((((((((..........)))).))))).....--(((........))))))).-....((((...((((((((.....)))))))).)))).... ( -21.70)
>DroPse_CAF1 118777 97 - 1
GGAUUCUGGAUGGACAAUUUUGUCGAUGCAUUGACCCGA---CAUGUAG-UUUGUGGUUA-AAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAAGCAGUCCG
...........((((......((((((...(((((((((---.......-.))).)))))-).))))))(((((((((((.....))))))))))).)))). ( -31.60)
>DroGri_CAF1 108367 92 - 1
-GUCAGUC---ACA-CAUUUUGUCAAUGCAUUGACCCAA---CAUGUAU-UUUGUGGUCA-AAGUUGCCGUUUGACAUUUAUACCGGAUGUCAAGCGGACGG
-....(((---...-............((((((((((((---.......-.))).)))))-)...)))((((((((((((.....))))))))))))))).. ( -28.10)
>DroEre_CAF1 91938 99 - 1
GGUCAUCGGUUGUCCUUUCUUCUCGAUGCAUUGACCCAA--CCAUCUAGUUUUGCGGUCA-AAGUUGGCGUUUGACAUUCAUGCCGGAUGUCAAGUCGUCCC
.(.((((((..(......)...))))))).(((((((((--..........))).)))))-)....((((((((((((((.....)))))))))).)))).. ( -28.30)
>DroWil_CAF1 95825 91 - 1
GGACA----------CUUUUUGUCAAUGCAUUGACCCAACAACAUGUAU-UUUGUGGUCAAAAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAACCCAGCCC
.((((----------.....))))......((((((..((((.......-.))))))))))..(((((.(((.(((((((.....))))))))))))))).. ( -25.70)
>DroPer_CAF1 150455 97 - 1
GGAUUCUGGAUGGACAAUUUUGUCGAUUCAUUGACCCGA---CAUGUAG-UUUGUGGUUA-AAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAAGCAGUCCG
...........((((......(((((((..(((((((((---.......-.))).)))))-))))))))(((((((((((.....))))))))))).)))). ( -31.40)
>consensus
GGACACUGG_UGGACAAUUUUGUCGAUGCAUUGACCCAA___CAUGUAG_UUUGUGGUCA_AAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAAGCAGUCCC
.....................((((((....((((((((............))).)))))...))))))(((((((((((.....)))))))))))...... (-19.36 = -19.20 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:59 2006