Locus 2731

Sequence ID X_DroMel_CAF1
Location 7,332,508 – 7,332,599
Length 91
Max. P 0.694729
window4468

overview

Window 8

Location 7,332,508 – 7,332,599
Length 91
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 79.34
Mean single sequence MFE -21.74
Consensus MFE -13.64
Energy contribution -14.20
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.34
SVM RNA-class probability 0.694729
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7332508 91 - 22224390
GAGAGUUUGAUAUUGGUGGGGGUUUUGGUUCCAAAGGGAAACGUAGCAUAA---UCAUACCCAGUACAACAUUUUCAGACAAAGAAAACGAUUG
....((((((...((.((.((((..(((((....(.(....).).....))---))).))))....)).))...)))))).............. ( -19.00)
>DroSec_CAF1 81229 83 - 1
GAGAGUUUGAUAUUGGUGGGGGGCUUCGUUCCAAAGGGAAACGAAGCAUAC---UCCUACCCAAUA---CAUUUUCAGACAAAGAAAAC-----
....((((((((((((((((((((((((((((....)).))))))))...)---))))).))))))---.....)))))).........----- ( -31.40)
>DroYak_CAF1 109128 86 - 1
GAGAGUUUGAUAUUGGUUGGGUCUUAAGUUGCAAAGGGAAUCUUAACAUACCCCUCCUACCAAAUA---CAUUUUCAGACAAAGAAAGC-----
....((((((...((.((((((........))..((((.............))))....))))...---))...)))))).........----- ( -14.82)
>consensus
GAGAGUUUGAUAUUGGUGGGGGCUUUAGUUCCAAAGGGAAACGUAGCAUAC___UCCUACCCAAUA___CAUUUUCAGACAAAGAAAAC_____
....(((((((((((((((((..(((((((((....)))).)))))........))))))).))))........)))))).............. (-13.64 = -14.20 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:58 2006