Locus 2730

Sequence ID X_DroMel_CAF1
Location 7,328,626 – 7,328,728
Length 102
Max. P 0.764956
window4467

overview

Window 7

Location 7,328,626 – 7,328,728
Length 102
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 88.80
Mean single sequence MFE -34.72
Consensus MFE -26.03
Energy contribution -26.47
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.88
Structure conservation index 0.75
SVM decision value 0.51
SVM RNA-class probability 0.764956
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7328626 102 - 22224390
ACUGGCCCACUGAGAGAGUAGAUG------GUGGGUUGAUGGGUGAGGGGGGAAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG
...((((((((............)------)))))))..(((((((((..((((((((((((((...(..-..)...)).))))..)))))))).))))))..)))... ( -33.10)
>DroSec_CAF1 77307 100 - 1
ACUGGCCCACUGAGAGA---GGUG------GUGGGUUGGUGGAUGAGGGGGGAAAAUGGUGGGCAAAGUGGGGCGUGGCGCUACUGCAUUUUCUACUUCAUUGCCAAAG
((..(((((((......---...)------))))))..)).(((((((..(((((((((....)..(((((.((...)).))))).)))))))).)))))))....... ( -37.60)
>DroSim_CAF1 76881 99 - 1
ACUGGCCCACUGAGAGA---GGUG------GUGGGUUGGUGGGUGAGGGGGGAAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG
((..(((((((......---...)------))))))..))((((((((..((((((((((((((...(..-..)...)).))))..)))))))).))))))..)).... ( -37.40)
>DroEre_CAF1 87458 102 - 1
ACUGGCCCACUGAGUUG---GGUGGUGGUGGUGGAUU---GGGCGCGGCGGGUAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG
....(((((......))---)))..(((..(((((.(---((((.((.((......)).)).)).(((((-(((...)).))))))......))).)))))..)))... ( -32.40)
>DroYak_CAF1 105120 95 - 1
ACUGGCCCACUGAGAUA---GGUG------GUGGAUU---CGGUGAGG-GGGAAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG
..(((((((((......---))))------)......---.(((((((-..(((((((((((((...(..-..)...)).))))..)))))))..)))))))))))... ( -33.10)
>consensus
ACUGGCCCACUGAGAGA___GGUG______GUGGGUUG_UGGGUGAGGGGGGAAAAUGGUGGGCAAAGUG_GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG
..((((((((....................)))).......(((((((..((((((((((((((...(.....)...)).))))..)))))))).)))))))))))... (-26.03 = -26.47 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:57 2006