Locus 272

Sequence ID X_DroMel_CAF1
Location 916,059 – 916,154
Length 95
Max. P 0.877642
window416

overview

Window 6

Location 916,059 – 916,154
Length 95
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 75.39
Mean single sequence MFE -24.13
Consensus MFE -15.45
Energy contribution -15.07
Covariance contribution -0.39
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.64
SVM decision value 0.90
SVM RNA-class probability 0.877642
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 916059 95 - 22224390
--------CGCCCCUCAGCUCCUGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUAGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA
--------.((.....(((((((((((.((....))))))).------..))))))....((((((......)))))).))((((.....))))............... ( -23.60)
>DroPse_CAF1 25455 84 - 1
------------------CUCGACGCGAGAGACCACCUCCACGUGGAUGUGGAGCUAUUUUUGCAUGCUUUUGUGCAACGCGCAAACAAUUUGCAUUUU-------CCA
------------------...(.((((((((.((((.(((....))).)))).((.......))...))))))))).....((((.....)))).....-------... ( -23.40)
>DroSec_CAF1 7532 103 - 1
ACGCUGCACGCCCCUCAGCUCCUGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUUGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA
.....((.........(((((((((((.((....))))))).------..))))))....(((((((....))))))).))((((.....))))............... ( -24.70)
>DroEre_CAF1 8725 103 - 1
UCGCUACACGCCCCGCAUCUCCGGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUUGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA
..((..(((((((((......)))).))))).....((((..------..))))......(((((((....))))))).))((((.....))))............... ( -28.80)
>DroYak_CAF1 8141 97 - 1
------CACGUCCCUCAUCUCCUGGAGCGUGACCACCUCUGA------CCGGAGCUAUUUUUGCAUACUUUUGUGAGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA
------((((..((.........))..))))...........------..(((((...(((..((......))..))).))((((.....))))....)))........ ( -20.90)
>DroPer_CAF1 27332 84 - 1
------------------CUCGACGCGAGAGACCACCUCCACGUGGAUGUGGAGCUAUUUUUGCAUGCUUUUGUGCAACGCGCAAACAAUUUGCAUUUU-------CCA
------------------...(.((((((((.((((.(((....))).)))).((.......))...))))))))).....((((.....)))).....-------... ( -23.40)
>consensus
________CGCCCCUCA_CUCCUGGAGCGUGACCACCUCUGA______CCGGAGCUAUUUUUGCAUACUUUUGUGCGACGCGCAAACAAUUUGCAUUUUCCAUUUUCCA
..........................(((.......(((((........)))))......((((((......)))))))))((((.....))))............... (-15.45 = -15.07 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:33 2006