Locus 2701

Sequence ID X_DroMel_CAF1
Location 7,245,073 – 7,245,164
Length 91
Max. P 0.931031
window4420

overview

Window 0

Location 7,245,073 – 7,245,164
Length 91
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 82.21
Mean single sequence MFE -18.90
Consensus MFE -18.32
Energy contribution -18.10
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -0.71
Structure conservation index 0.97
SVM decision value 1.21
SVM RNA-class probability 0.931031
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7245073 91 + 22224390
AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCUACGAGUCUGGAA---UAUUUUUUUUUUUUG-
((((((.(((((..((((((...(((.((....)).)))....((....)).......)))))).....)))))..---..)))))).......- ( -17.80)
>DroEre_CAF1 1269 95 + 1
AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCUACGAGUCUGGAACUUUAUUUAUUUUUCUUGU
(((((((((....))(((.(((....))))))..............(((((.((((((((.....))))))))..)))))......))))))).. ( -20.00)
>DroYak_CAF1 18795 72 + 1
AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCCACGAGUCU-----------------------
..(((..(((....((((((...(((.((....)).)))....((....)).......)))))).))).)))----------------------- ( -18.90)
>consensus
AAGGAAGUCGGAAGGGGCCAUUAAGUGAUGCCAAUGAUUAACAACGGAAGUAUAGAUUUGGCCUACGAGUCUGGAA___UAUUU_UUUUU_UUG_
..(((..(((....((((((...(((.((....)).)))....((....)).......)))))).))).)))....................... (-18.32 = -18.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:15 2006