Locus 2687

Sequence ID X_DroMel_CAF1
Location 7,206,554 – 7,206,653
Length 99
Max. P 0.619664
window4402

overview

Window 2

Location 7,206,554 – 7,206,653
Length 99
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 92.34
Mean single sequence MFE -18.30
Consensus MFE -16.20
Energy contribution -16.40
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.89
SVM decision value 0.18
SVM RNA-class probability 0.619664
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7206554 99 + 22224390
UCGUUUC--UAUCUCUGCGUUGCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCAC--CC---
.......--......((.(..(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...))))..))).--..--- ( -18.30)
>DroSec_CAF1 14413 98 + 1
UCGUUUC--UAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCUC--CC---
.......--.........(.-(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...)))).)....--..--- ( -18.10)
>DroSim_CAF1 14805 98 + 1
UCGUUUC--UAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCUC--CC---
.......--.........(.-(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...)))).)....--..--- ( -18.10)
>DroEre_CAF1 15749 100 + 1
UCGUUUC--UAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACGGCUGGUUUUUUGGCCCACCGCCUCC---
.......--.......((((-(...(((((....(((((.((((...)))).)))))..))))).............(((..(....)..))))).)))....--- ( -18.70)
>DroYak_CAF1 16820 105 + 1
UCGUUUCCAUAUCUCCGCGU-GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCCACCCUUUUCCCU
..................((-(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...))).))).......... ( -18.30)
>consensus
UCGUUUC__UAUCUCCGCGU_GCCCGUUGUUUUCACAGGCAUUAUCAUAAUUUCUGUUUGCAACCCUAAAUCAACACUGCUGGUUUUUUGGGCUCCCUC__CC___
.....................(((((((((....(((((.((((...)))).)))))..)))))...((((((.......))))))...))))............. (-16.20 = -16.40 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:59 2006