Locus 2682

Sequence ID X_DroMel_CAF1
Location 7,194,029 – 7,194,128
Length 99
Max. P 0.552174
window4394

overview

Window 4

Location 7,194,029 – 7,194,128
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 93.85
Mean single sequence MFE -33.75
Consensus MFE -26.28
Energy contribution -26.62
Covariance contribution 0.33
Combinations/Pair 1.04
Mean z-score -2.67
Structure conservation index 0.78
SVM decision value 0.04
SVM RNA-class probability 0.552174
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7194029 99 - 22224390
ACC-AAAAAGGGGGGGCGG--UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC
.((-......))...((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -35.70)
>DroPse_CAF1 3036 99 - 1
ACU-GGGACUG--GGGCUGGCGAGCGAUAUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC
...-((...((--.(..((((...((.....(((((((.(((..(((((.........)))))))))))))))......))....))))..).))...)).. ( -29.30)
>DroSec_CAF1 1852 97 - 1
ACC-AAAAAGG--GGGCGG--UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC
.((-......)--).((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -35.70)
>DroSim_CAF1 1967 97 - 1
ACC-AAAAAGG--GGGCGG--UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC
.((-......)--).((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -35.70)
>DroEre_CAF1 1704 97 - 1
ACC-AAAAAGG--GGGCGG--UUGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC
.((-......)--).((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -33.60)
>DroYak_CAF1 1798 98 - 1
GGCAAAAAAGG--GGGCGG--UUGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC
...........--..((((--(((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))..))))))))) ( -32.50)
>consensus
ACC_AAAAAGG__GGGCGG__UCGCGAUUUGUUGACACAGCCAACGCCGCAAAAACAUUGGCGGGCGUGUUAAAUGAAAUGAAAAGCCAAACGCGCGACCGC
...............((((...((((.(((((((((((.(((..(((((.........)))))))))))))))......(....)..))))))))...)))) (-26.28 = -26.62 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:52 2006