Locus 2667

Sequence ID X_DroMel_CAF1
Location 7,151,362 – 7,151,463
Length 101
Max. P 0.989787
window4366 window4367

overview

Window 6

Location 7,151,362 – 7,151,463
Length 101
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 82.21
Mean single sequence MFE -30.92
Consensus MFE -21.01
Energy contribution -22.20
Covariance contribution 1.19
Combinations/Pair 1.12
Mean z-score -2.85
Structure conservation index 0.68
SVM decision value 2.18
SVM RNA-class probability 0.989787
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7151362 101 + 22224390
AAAAAAUCACGCACACACAGAACCAC------ACACGCAUGCAAAUAGCGAAAGAGAGCGAGGUGUCUGCGGCAGUGUGUGUGUGUGUUUCAUUCAUGAAU-CCAGAU
.....(((..(((((((((....(((------((.((((.(((....((........))....))).))))...))))))))))))))((((....)))).-...))) ( -31.30)
>DroSec_CAF1 19098 100 + 1
A-AAAAUCACGCACACACAGAACCAC------ACACGCAUGCAAAUAGCGAAAGAGAGCGAGGUGUCUGCGGCAGUGUGUGUGUGUGUUUCAUUCAUGAAU-CCAGAU
.-...(((..(((((((((....(((------((.((((.(((....((........))....))).))))...))))))))))))))((((....)))).-...))) ( -31.30)
>DroEre_CAF1 19789 87 + 1
U-AAACACACACACACA------------------CGCAUGCGAAUAGCGAAAGAGAGCGAGGUGUUUGCGCCAGUGUGU--GCGUGUUUCAUUCAUGAAUUCCAGAU
.-((((((.(((((((.------------------((((.(((....((........))....))).))))...))))))--).)))))).................. ( -28.00)
>DroYak_CAF1 19419 105 + 1
A-AAAAACACACACAUACACACCCACAGUCAAACUCGCAUGCGAAUAGCAAAAGAGAGCGAGGUGUGUGCGCCAGUGUGU--GUGUGUUUCAUUCAUGAAUUCCAGAU
.-..((((((((((((((...............(((...(((.....)))...))).....((((....)))).))))))--)))))))).................. ( -33.10)
>consensus
A_AAAAACACACACACACAGAACCAC______ACACGCAUGCAAAUAGCGAAAGAGAGCGAGGUGUCUGCGCCAGUGUGU__GUGUGUUUCAUUCAUGAAU_CCAGAU
.......((((((((((((................((((..((....((........))....))..))))....)))))))))))).((((....))))........ (-21.01 = -22.20 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 7,151,362 – 7,151,463
Length 101
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 82.21
Mean single sequence MFE -31.32
Consensus MFE -14.90
Energy contribution -19.59
Covariance contribution 4.69
Combinations/Pair 1.04
Mean z-score -2.82
Structure conservation index 0.48
SVM decision value -0.04
SVM RNA-class probability 0.512006
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7151362 101 - 22224390
AUCUGG-AUUCAUGAAUGAAACACACACACACACUGCCGCAGACACCUCGCUCUCUUUCGCUAUUUGCAUGCGUGU------GUGGUUCUGUGUGUGCGUGAUUUUUU
......-.((((....)))).(((.((((((((..((((((.((.....((........)).....(....))).)------)))))..)))))))).)))....... ( -31.40)
>DroSec_CAF1 19098 100 - 1
AUCUGG-AUUCAUGAAUGAAACACACACACACACUGCCGCAGACACCUCGCUCUCUUUCGCUAUUUGCAUGCGUGU------GUGGUUCUGUGUGUGCGUGAUUUU-U
......-.((((....)))).(((.((((((((..((((((.((.....((........)).....(....))).)------)))))..)))))))).))).....-. ( -31.40)
>DroEre_CAF1 19789 87 - 1
AUCUGGAAUUCAUGAAUGAAACACGC--ACACACUGGCGCAAACACCUCGCUCUCUUUCGCUAUUCGCAUGCG------------------UGUGUGUGUGUGUUU-A
..................((((((((--((((((..(((((........((........))........))))------------------)))))))))))))))-. ( -28.29)
>DroYak_CAF1 19419 105 - 1
AUCUGGAAUUCAUGAAUGAAACACAC--ACACACUGGCGCACACACCUCGCUCUCUUUUGCUAUUCGCAUGCGAGUUUGACUGUGGGUGUGUAUGUGUGUGUUUUU-U
.................(((((((((--(((.....((((((.(((.(((..(((...(((.....)))...)))..)))..))).)))))).)))))))))))).-. ( -34.20)
>consensus
AUCUGG_AUUCAUGAAUGAAACACAC__ACACACUGCCGCAGACACCUCGCUCUCUUUCGCUAUUCGCAUGCGUGU______GUGGUUCUGUGUGUGCGUGAUUUU_U
.................((((((((((((((((..(((((........(((...................))).........)))))..))))))))))))))))... (-14.90 = -19.59 +   4.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:28 2006