Locus 2664

Sequence ID X_DroMel_CAF1
Location 7,144,926 – 7,145,027
Length 101
Max. P 0.999495
window4362

overview

Window 2

Location 7,144,926 – 7,145,027
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 94.39
Mean single sequence MFE -49.46
Consensus MFE -45.52
Energy contribution -45.04
Covariance contribution -0.48
Combinations/Pair 1.06
Mean z-score -2.26
Structure conservation index 0.92
SVM decision value 3.65
SVM RNA-class probability 0.999495
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7144926 101 + 22224390
GACGUCGGCA------GCGGCAGAGUUGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC
...(((((((------((......))))))))).((((((((((((((((.(.((((.......).))).))))))))))))..(((((....)))))...))))). ( -51.30)
>DroSec_CAF1 12691 101 + 1
GACGUCGACA------GCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC
...((((((.------((......)).)))))).((((((((((((((((.(.((((.......).))).))))))))))))..(((((....)))))...))))). ( -48.10)
>DroSim_CAF1 7064 101 + 1
GACGUCGACA------GCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC
...((((((.------((......)).)))))).((((((((((((((((.(.((((.......).))).))))))))))))..(((((....)))))...))))). ( -48.10)
>DroEre_CAF1 13123 107 + 1
GACGUCGGCAGCGGCAGCGGCAGAGUCGUUGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGUCGAUCGGCGCAACGUUGCC
(((.((.((.((....)).)).)))))...(((((((..(((((((((((.(.((((.......).))).))))))))))))..(((((....)))))..))))))) ( -48.40)
>DroYak_CAF1 12824 107 + 1
GACGUCGGCAGUGGCAGCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC
((((.(.((.((....)).))...).))))(((((((..(((((((((((.(.((((.......).))).))))))))))))..(((((....)))))..))))))) ( -51.40)
>consensus
GACGUCGGCA______GCGGCAGAGUCGUCGGCAGCGACGACAGAGUGUCUGGCGGCGUAGCAAGACUGGCGACAUUCUGUCUGGUGGCGAUCGCCGCAACGUUGCC
(((((((..........))))...)))...(((((((..(((((((((((.(.((((.......).))).))))))))))))..(((((....)))))..))))))) (-45.52 = -45.04 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:24 2006