Locus 2663

Sequence ID X_DroMel_CAF1
Location 7,144,459 – 7,144,563
Length 104
Max. P 0.825115
window4361

overview

Window 1

Location 7,144,459 – 7,144,563
Length 104
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 93.84
Mean single sequence MFE -22.47
Consensus MFE -21.04
Energy contribution -21.04
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.94
SVM decision value 0.69
SVM RNA-class probability 0.825115
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7144459 104 - 22224390
UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCAGCCAACU----ACAACUACUGA
...........(((((((.((....))...(((((.....((((....))))(((((.(((........))).....))))))))))...)))----))))....... ( -23.00)
>DroSec_CAF1 12220 104 - 1
UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCGGCCAACU----ACAACUACUGA
...........(((((((.((....))....((((.....((((....))))(((((.(((........))).....)))))....)))))))----))))....... ( -22.40)
>DroSim_CAF1 6582 104 - 1
UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCGGCCAACU----ACAACUACCGA
...........(((((((.((....))....((((.....((((....))))(((((.(((........))).....)))))....)))))))----))))....... ( -22.40)
>DroEre_CAF1 12641 107 - 1
UAUA-UCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCAACAAUCGCCAGCCAACUAUGUACAACUACUAA
....-........(((((...((.......(((((.....((((....))))(((((.(((........))).....))))))))))........))...)))))... ( -21.56)
>DroYak_CAF1 12329 99 - 1
-----ACCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCAACAAUCGCCAGCCAACU----ACAACUACUGA
-----......(((((((.((....))...(((((.....((((....))))(((((.(((........))).....))))))))))...)))----))))....... ( -23.00)
>consensus
UAUAUCCCCCUUUGUGGUGCGACCUCGACUUUGGCAAACUGAUCGAUCGAUCGAUUGCUGCACCACCACGCAACCACCAAUCGCCAGCCAACU____ACAACUACUGA
.............(((((.((....))...(((((.....((((....))))(((((.(((........))).....)))))....))))).........)))))... (-21.04 = -21.04 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:23 2006