Locus 266

Sequence ID X_DroMel_CAF1
Location 901,285 – 901,381
Length 96
Max. P 0.939245
window408

overview

Window 8

Location 901,285 – 901,381
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.99
Mean single sequence MFE -34.05
Consensus MFE -21.18
Energy contribution -21.21
Covariance contribution 0.03
Combinations/Pair 1.35
Mean z-score -2.15
Structure conservation index 0.62
SVM decision value 1.30
SVM RNA-class probability 0.939245
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 901285 96 - 22224390
GCUGCUGCUCCUCCAAAACUAAGACCCUUCUUUGACAUCAGGGCGGCAGCUACGGCUGCUGCUUUCCUAGUUUUCUCCUCCUUGGAAGCCGCAUCC
((.(((........(((((((.((.......(((....)))(((((((((....))))))))).)).))))))).(((.....)))))).)).... ( -32.10)
>DroVir_CAF1 10388 96 - 1
GCAGUUGCAUUAGCGCCACCAAGACCCUUUUUGCUUAUCAGUGCAGCGGCAACGGCAGCCGCUUUGCGCGUCUUCUCCUCCUUAGAAGCGGCGUCC
((....))....(((((.......................((((((((((.......)))))..)))))(.(((((.......))))))))))).. ( -29.50)
>DroPse_CAF1 26645 96 - 1
GCUGCAGCUCCUCCAAAACUAAGUCCCUUCUUGCUCAUGAGCGCUGCGGCCACGGCGGCCGCCUUGCGCGUCUUCUCCUCCUUGGAGGCGGCAUCC
......((((((((((...((((......)))).......((((.((((((.....))))))...))))............))))))).))).... ( -36.00)
>DroSec_CAF1 16336 96 - 1
GCUGCUGCUCCUCCAAAACUAAGCCCCUUCUUUGACAUUAGGGCGGCAGCUACAGCUGCUGCUUUCCUAGUUUUCUCCUCCUUGGAAGCCGCAUCC
..(((.(((..(((((..(.(((......))).)..((((((((((((((....))))))))...))))))..........)))))))).)))... ( -29.50)
>DroMoj_CAF1 10320 93 - 1
GCAGCUG---UGCCGCCGCCCAGACCCUUUUUGCUGAUCAGGGCAGCGGCCACAGCAGCCGCCUUGCGAGUCUUCUCCUCCUUGGAAGCGGCGUCC
...((((---((((((.((((.((..(........).)).)))).)))).)))))).(((((.((.((((..........)))).))))))).... ( -41.20)
>DroPer_CAF1 27258 95 - 1
GCUGCAGCUCCUCCAAAACUAAGUCCCUUCUUGCUCAUGAGCGCUGCGGCCACGGCGGCCGCCUUGCGCGUCUUCUC-UCCUUGGAGGCGGCAUCC
......((((((((((...((((......)))).......((((.((((((.....))))))...))))........-...))))))).))).... ( -36.00)
>consensus
GCUGCUGCUCCUCCAAAACUAAGACCCUUCUUGCUCAUCAGGGCAGCGGCCACGGCAGCCGCCUUGCGAGUCUUCUCCUCCUUGGAAGCGGCAUCC
((((((((...........((((......)))).........)))))))).......((((((((...................)))))))).... (-21.18 = -21.21 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:25 2006