Locus 2657

Sequence ID X_DroMel_CAF1
Location 7,135,815 – 7,135,934
Length 119
Max. P 0.876220
window4353

overview

Window 3

Location 7,135,815 – 7,135,934
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.58
Mean single sequence MFE -30.68
Consensus MFE -23.23
Energy contribution -24.60
Covariance contribution 1.37
Combinations/Pair 1.07
Mean z-score -2.01
Structure conservation index 0.76
SVM decision value 0.89
SVM RNA-class probability 0.876220
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7135815 119 - 22224390
AUAUUUGGCAAAAAUUAAUAGUGAGGAGCGGAAAGCGAAAGGAUAAUAGGGU-AGCGGAGACGAAGCCUUAUAUUUCCACCAGAAAAUCCUGGCACAAUUUAUGACAACUCUACACUUGU
...................((((.((((.(((((.(....)....(((((((-..((....))..))))))).))))).((((......))))...............)))).))))... ( -32.00)
>DroSec_CAF1 3701 115 - 1
UUUUUUGCCAAAA----AAAGUGAGGAGUGGAAAGCGAAAGGAUAAUAGGGA-AGCGGAUACGAAGCCUUAUAUUUCCACCAGAAAAUCCUGGCACAAUUUAUGACAACUCUACACUUGU
.............----.(((((.((((((((((.(....)....((((((.-..((....))...)))))).))))).((((......))))..............))))).))))).. ( -30.50)
>DroEre_CAF1 3804 115 - 1
UUUUAUUUCCCAA----AGAGUGAGGAGUGGAAAGCGAAAGGAUAAUAAGGAAAUCGGAGAGGAAGCCCUAUUUUUCCACCAGAAAAUCCUGCCACAAUUAAU-GCAACUCUACACUCGU
.............----.(((((.((((((((...(....)........(((((......(((....)))...))))).........)))(((..........-)))))))).))))).. ( -25.70)
>DroYak_CAF1 2997 116 - 1
AUUUCGCUCCCAA----AGAGUGAGGAGUGGCAAGCGAAAGGAUAAUAGGGAAAUCGGAGAGGAAGCCUUAUAUUUCCACCAGCAAAUCCUGGCCCAAUUUAUGGCAGCUCUACACUCGU
..(((((((....----.)))))))(((((...(((...(((((.....((((((..(((.(....))))..))))))........))))).(((........))).)))...))))).. ( -34.52)
>consensus
AUUUUUGUCAAAA____AGAGUGAGGAGUGGAAAGCGAAAGGAUAAUAGGGA_AGCGGAGACGAAGCCUUAUAUUUCCACCAGAAAAUCCUGGCACAAUUUAUGACAACUCUACACUCGU
..................(((((.((((((((((.(....)....((((((....((....))...)))))).))))).((((......))))..............))))).))))).. (-23.23 = -24.60 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:16 2006