Locus 2644

Sequence ID X_DroMel_CAF1
Location 7,062,987 – 7,063,078
Length 91
Max. P 0.500000
window4331

overview

Window 1

Location 7,062,987 – 7,063,078
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 93.41
Mean single sequence MFE -30.04
Consensus MFE -23.42
Energy contribution -24.46
Covariance contribution 1.04
Combinations/Pair 1.05
Mean z-score -1.51
Structure conservation index 0.78
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7062987 91 - 22224390
GUGGACGCACAAUGUGCUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA
(..(.(((.....))))..)....((((.(((..(..(((.((....)).)))..)..))).))))......(((.........))).... ( -31.70)
>DroSec_CAF1 53976 91 - 1
GUGGACGCACAAUGUGGUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA
(..(..((((......))))....((((.(((..(..(((.((....)).)))..)..))).))))...........)..).......... ( -33.30)
>DroSim_CAF1 54421 91 - 1
GUGGACGCACAAUGUGGUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA
(..(..((((......))))....((((.(((..(..(((.((....)).)))..)..))).))))...........)..).......... ( -33.30)
>DroEre_CAF1 54922 91 - 1
GUGGACGCACAAUGUGCUGCAAGUGGUGCAAGUGGUGGCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA
......((((...))))((((.(((((((..((((((((((((.(......).)))))))))))).))...)).))).))))......... ( -28.40)
>DroYak_CAF1 54095 82 - 1
GUGGACGCACAAUGUG---------GUGCAAGUGGUACCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA
..((..((((......---------))))..(..((((((.((....)).))))))..).....))......(((.........))).... ( -23.50)
>consensus
GUGGACGCACAAUGUGCUGCAAGUGGUGCUGGUGGUGCCAGUGGUGUCAGUGGUGCUGCCAUUACCGUUAGACUCACCUGCAAAGAGAAAA
(..(.(((.....)))........((((.(((..((((((.((....)).))))))..))).))))...........)..).......... (-23.42 = -24.46 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:57 2006