| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,058,796 – 7,058,889 |
| Length | 93 |
| Max. P | 0.967154 |
| Location | 7,058,796 – 7,058,889 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 92.43 |
| Mean single sequence MFE | -26.24 |
| Consensus MFE | -22.60 |
| Energy contribution | -23.40 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7058796 93 + 22224390 -UUGGCCAUUAAUGGCAAAUUUUUGCCAGUGCCCUCGAUCGCUACUUUGUUUA-UUCUACAAUGCAGUGCCGUCUUGCAUUGCGUCACAGGCCGA -((((((.....((((((....))))))(((................(((...-....)))(((((((((......)))))))))))).)))))) ( -29.50) >DroSec_CAF1 49874 93 + 1 -UUGGACAUUAAUGCCAAAUUUUUGCCAGUGCCCUCGAUCGCUACUUUGUUUA-UUCUACAAUGCAGUGCCGUCUUGCAUUGCGUCACAGGCCGA -((((.((....))))))......(((.(((................(((...-....)))(((((((((......)))))))))))).)))... ( -20.40) >DroSim_CAF1 50315 93 + 1 -UUGUACAUUAAUGGCAAAUUUUUGCCAGUGCCCUCGAUCGCUACUUUGUUUA-UUCUACAAUGCAGUGCCGUCUUGCAUUGCGUCACAGGCCGA -...........((((((....))))))(.(((...(((.......((((...-....)))).(((((((......))))))))))...)))).. ( -22.80) >DroEre_CAF1 50688 95 + 1 GUUGGCCAACAAUGGCAAAUUUUUGACAGUGCCCUCGAUCGCUACUACGUUUUUUUGUACAAUGCAGUGCCGUCUUGCAUUGCGUCACAGGCCGA .((((((.......(((((.....((((((((........)).)))..)))..)))))...(((((((((......)))))))))....)))))) ( -25.60) >DroYak_CAF1 49636 93 + 1 -UUGGCCAAUAAUGGCAGAUUUCUGUCAGUGAGCUCGAUCGCUACUUUGUUUA-UUCUACAAUGCAGUGCCGUCUUGCAUUGCGUCACAGGCCGA -((((((.....((((((....))))))((((((......)))..........-.......(((((((((......)))))))))))).)))))) ( -32.90) >consensus _UUGGCCAUUAAUGGCAAAUUUUUGCCAGUGCCCUCGAUCGCUACUUUGUUUA_UUCUACAAUGCAGUGCCGUCUUGCAUUGCGUCACAGGCCGA .((((((.....((((((....))))))(((................(((........)))(((((((((......)))))))))))).)))))) (-22.60 = -23.40 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:55 2006