| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,056,118 – 7,056,214 |
| Length | 96 |
| Max. P | 0.899805 |
| Location | 7,056,118 – 7,056,214 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 90.48 |
| Mean single sequence MFE | -13.97 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.83 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7056118 96 + 22224390 AGUACACUUCUUAC--ACACGCACAAACUUAUAGUUUUAGGCUGUAGAUAUAAGAUCUACAAUUAUUCAAAGUACACAAAAUAUCAUUUUAACAACUA .((((.........--....((..((((.....))))...))(((((((.....)))))))..........))))....................... ( -14.60) >DroSec_CAF1 47457 98 + 1 AGUACACCUCUCACACACACGCACAAACUUAAAGUUUUGGGCUGUAGAUAUAAAUUCUACAAUUAUUCAAAGUACCCAAAAUACCAUUUUAACAACUG .................................((((((((.((((((.......))))))..(((.....)))))))))))................ ( -13.20) >DroSim_CAF1 47909 98 + 1 AGUACACCUCUCACACACACGCACAAACUUGAAGUUUUAGGUUGUAGAUAUAACAUCUACAAUUAUUCAAAGUACGCAAAAUAUCAUUUUAACAACUG .((((...................((((.....))))..((((((((((.....)))))))))).......))))....................... ( -14.10) >consensus AGUACACCUCUCACACACACGCACAAACUUAAAGUUUUAGGCUGUAGAUAUAAAAUCUACAAUUAUUCAAAGUACACAAAAUAUCAUUUUAACAACUG .((((...............((..((((.....))))...))(((((((.....)))))))..........))))....................... (-12.72 = -12.83 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:53 2006