Locus 2632

Sequence ID X_DroMel_CAF1
Location 7,030,788 – 7,030,906
Length 118
Max. P 0.500000
window4314

overview

Window 4

Location 7,030,788 – 7,030,906
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.33
Mean single sequence MFE -35.32
Consensus MFE -25.94
Energy contribution -26.78
Covariance contribution 0.84
Combinations/Pair 1.09
Mean z-score -1.69
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7030788 118 - 22224390
AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCUCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU-UUGGGUUUUGUGAAUUGGGAGUCGCAC
.....((((((...)))))).(((((.((.(((.((((((((((..((..((....(((((.....)))))))))..))))))(((((...-.))))))))).))).)).))))).... ( -36.40)
>DroSec_CAF1 22296 117 - 1
AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCUCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU-UUGGGUUUUACGGAUAGGGAGUCGCA-
.....((((((...)))))).(((((..........(((((........)))))..(((((.....)))))(((((((((.(((((((...-.)))))))))).)))))))))))...- ( -35.20)
>DroSim_CAF1 21457 117 - 1
AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCCCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU-UUGGGUUUUGCGGAUAGAGAGUCGCA-
.....((((((...)))))).((((((((..........)))..(((..((((...(((((.....)))))...)))).(((((((((...-.)))).))))))))....)))))...- ( -35.30)
>DroEre_CAF1 22355 116 - 1
AUCUGGCACAGCUUCUGUGCGGACUCACAUUUUUCAAGGGGCACUCCAUUAGCUAAUGGACUCGAUGUCCACUUAUUGUGCAAACUCAAUU-UUGGGCUUUGUGGACAGG-AGUCGCA-
.....((((((...)))))).(((((............(((...((((((....)))))))))..(((((((.....((.((((......)-))).))...))))))).)-))))...- ( -37.30)
>DroYak_CAF1 20342 115 - 1
AUCUGGCACAGCUUCUGUGCGGACUCACAUCUUUCGAGGGGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUUUUUGGGUUUUGUGGAUAGG-ACCUG---
.((((.(((((...)))))))))(((.........)))((((..(((((((((...(((((.....)))))...))))...(((((((.....))))))).)))))....-)))).--- ( -32.40)
>consensus
AUCUGGCACAGCUUCUGUGCGGACUCACAUUUCUCAAGUUGUACUCCAUUAGCUAAUGGACUCGAUGUCCACUUGUUGUGCAAACUCAAUU_UUGGGUUUUGUGGAUAGGGAGUCGCA_
.....((((((...)))))).(((((.(................((((((....)))))).....(((((((.....))(((((((((.....)))).))))))))))).))))).... (-25.94 = -26.78 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:42 2006