| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,006,336 – 7,006,429 |
| Length | 93 |
| Max. P | 0.996273 |
| Location | 7,006,336 – 7,006,429 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.47 |
| Mean single sequence MFE | -26.05 |
| Consensus MFE | -20.99 |
| Energy contribution | -20.67 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.81 |
| SVM decision value | 2.68 |
| SVM RNA-class probability | 0.996273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7006336 93 + 22224390 UGGCCAGCAUUAGCGACCAUCGAGGGUAAUCAUA-AUGUUGAAGUCGAAAUAUGAAUGCUCUAUAAUAAGUAAGAGGUGGUUGCCAU--------------CCUAUUA------------ ((((..((....))(((((((.((((((.(((((-...(((....)))..))))).)))))).............))))))))))).--------------.......------------ ( -25.24) >DroSec_CAF1 7583 93 + 1 UGGCCGGCAUUAGCGACCAUCGAGGGUAAUCACA-AAGUUGAAGUCGAAAUAUGAAUGCUCUACAAUAAGUAAGAGGUGGUUGCCAA--------------CCUAUUA------------ ((((..((....))(((((((..(((((.(((..-...(((....)))....))).)))))(((.....)))...))))))))))).--------------.......------------ ( -23.00) >DroYak_CAF1 21790 120 + 1 UGGCCAGCAUAAGCGGCCAUCGAGGGUAAUCAUGCAGCUUGGAGUCGAAGUAUGGAUGCUCUGCAUUAAGUUGAAGCUGGUGGUCAUUAUAAGCUUUUUAUAAAUUAAAUGUACUGUAAA (((((.((....)))))))...((((((.((((((..(........)..)))))).))))))(((((.((((((((((.(((.....))).)))))).....)))).)))))........ ( -29.90) >consensus UGGCCAGCAUUAGCGACCAUCGAGGGUAAUCAUA_AAGUUGAAGUCGAAAUAUGAAUGCUCUACAAUAAGUAAGAGGUGGUUGCCAU______________CCUAUUA____________ ((((..((....))(((((((.((((((.(((((....(((....)))..))))).))))))((.....))....))))))))))).................................. (-20.99 = -20.67 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:28 2006