Locus 2618

Sequence ID X_DroMel_CAF1
Location 7,003,128 – 7,003,243
Length 115
Max. P 0.558065
window4289

overview

Window 9

Location 7,003,128 – 7,003,243
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.33
Mean single sequence MFE -28.95
Consensus MFE -20.36
Energy contribution -21.68
Covariance contribution 1.31
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.70
SVM decision value 0.05
SVM RNA-class probability 0.558065
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7003128 115 + 22224390
CUGGGGGCUGGUAGAAAGU-----GGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUGGCA
......((..(..((((((-----(((.(((....)))(((..(((((.........)))))..).))......)))))))))...........((........))........)..)). ( -28.50)
>DroSec_CAF1 4532 111 + 1
---------GGUAGAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUUGCA
---------(((.(((((.((((.(((.(((....))).)))((((((.........)))))).))))))))).)))........................................... ( -27.20)
>DroSim_CAF1 7558 110 + 1
---------GGUAGAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUAUGCUAAUAUUGAGCAUAUUAUUUCA-UUUUUUUAGGCA
---------(((.(((((.((((.(((.(((....))).)))((((((.........)))))).))))))))).)))...((((((.......))))))........-............ ( -32.20)
>DroEre_CAF1 10295 111 + 1
U---------GAAAAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUAGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUGGCA
(---------((.((((((((.(((((.(((....))).)))(.(((.((((.....))))))).)......)).)))))))).)))....................(((......))). ( -27.90)
>consensus
_________GGUAGAAAGUGGGUGGGUGGGCGAAAGCCGACUGGCAGACUGAUUUAUUUUGCUGGCUCUUUUCAACCAUUUUUAUUAUUAUUACGAUUAUUAUUUCUGUUUUGUUUGGCA
.............((((((((.((((..(((....)))(((..(((((.........)))))..).))..)))).))))))))..................................... (-20.36 = -21.68 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:19 2006