Locus 2616

Sequence ID X_DroMel_CAF1
Location 7,002,229 – 7,002,341
Length 112
Max. P 0.956651
window4286

overview

Window 6

Location 7,002,229 – 7,002,341
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.05
Mean single sequence MFE -38.70
Consensus MFE -31.50
Energy contribution -31.90
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.81
SVM decision value 1.47
SVM RNA-class probability 0.956651
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7002229 112 + 22224390
GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGU-------GGCUGGCAUGAUCAGGAG-GGAGGAGGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA
((.....)).....((....(((((...((((....))))...)-------))))(((.((((.....(-(.(((.((((((.(((.....))).))))))))).))..)))).))))). ( -34.80)
>DroSec_CAF1 3691 108 + 1
GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG-------GGCUGGCAGGAGCAGGAG-GG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA
((.....))...((((...(.(((.....))).)...)))).((-------(((((((..(.(((....-((----((((((.(((.....))).))))))))))))..))).)))))). ( -38.30)
>DroSim_CAF1 6721 108 + 1
GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG-------GGCUGGCAGGAGCAGGAG-GG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA
((.....))...((((...(.(((.....))).)...)))).((-------(((((((..(.(((....-((----((((((.(((.....))).))))))))))))..))).)))))). ( -38.30)
>DroEre_CAF1 9402 101 + 1
GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG--------GCUGGCAGGAG-------GG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA
((.....))...((((...(.(((.....))).)...))))(((--------((((((.((..-------((----((((((.(((.....))).))))))))..))..))).)))))). ( -39.40)
>DroYak_CAF1 18188 116 + 1
GCGAAAUGCAAAUAGAAAAUGGCUGGAGAGGCGAGAGUCUGGGGGGCGGGUGGCUGGCAGGAGAACAAGGGG----GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA
((.....))...((((...(.(((.....))).)...)))).(((((...((((((((.(.....)...(((----((((((.(((.....))).)))))))))))).))))).))))). ( -42.70)
>consensus
GCGAAAUGCAAAUAGAAAAUGGCUGGAAAGGCGAGAGUCUGGGG_______GGCUGGCAGGAGCAGGAG_GG____GGCGUGGCGGGGUGUCUGGCACGUCCUUGCCAAGUCAAGUCUCA
((.....))...........((((....((((....))))...........((((((((((...............((((((.(((.....))).)))))))))))).)))).))))... (-31.50 = -31.90 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:16 2006