Locus 2609

Sequence ID X_DroMel_CAF1
Location 6,996,069 – 6,996,173
Length 104
Max. P 0.549677
window4272

overview

Window 2

Location 6,996,069 – 6,996,173
Length 104
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.50
Mean single sequence MFE -25.81
Consensus MFE -17.40
Energy contribution -17.85
Covariance contribution 0.45
Combinations/Pair 1.11
Mean z-score -1.75
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.549677
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6996069 104 + 22224390
UGAGAUAGGUAUCGACACAAUAUAGUCGUGAUGUCCUUUUGCAGACAAAAGAACUCAAGCUCUAAGGCU----------------UUUCUGAGAUAUAUUUCAUUCCUUUUUCCUAUCAU
...((((((....(((........)))(..(((..((((((....))))))..((((((((....))))----------------....))))........)))..).....)))))).. ( -22.00)
>DroSec_CAF1 18424 120 + 1
UGAGAUAUGUAUCGACACAAUAUAGUCGGGAUAUCCAUUGGCAGACAAUGGAACUCAAGCUCUAAGGCUUCCUAAUAUUAUCAGUUUUCUGAGUUAUAUUCCAUUCUCUUCUUCUAGCAU
.((((........(((........)))(((((((((((((.....))))))).....(((((.((((((.............))))))..))))).))))))..))))............ ( -27.82)
>DroSim_CAF1 3575 120 + 1
UGAGAUAUGUAUCGACACAAUAUAGUCGGGAUAUCCAUUGGCAGUCAAUGGAACUCAAGCUCUAAGGCUUCCUAGUAUUAUCAGUUUUCUGAGUUAUAUUCCAUUCUCUUUUUCUAGCAU
.((((........(((........)))(((((((((((((.....))))))((((((((((.(((.(((....))).)))..))))...)))))))))))))..))))............ ( -27.60)
>consensus
UGAGAUAUGUAUCGACACAAUAUAGUCGGGAUAUCCAUUGGCAGACAAUGGAACUCAAGCUCUAAGGCUUCCUA_UAUUAUCAGUUUUCUGAGUUAUAUUCCAUUCUCUUUUUCUAGCAU
.((((........(((........)))(((((((((((((.....))))))).((((((((....))))....................))))...))))))..))))............ (-17.40 = -17.85 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:04 2006