| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,993,983 – 6,994,142 |
| Length | 159 |
| Max. P | 0.897547 |
| Location | 6,993,983 – 6,994,102 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.77 |
| Mean single sequence MFE | -40.27 |
| Consensus MFE | -37.39 |
| Energy contribution | -37.50 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.897547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6993983 119 - 22224390 CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUUGGGGGCGGAGGGGAAAA-GGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((.(((((.(((((((((....))))))))).))))-)...)))..)))).))))))))))).... ( -39.70) >DroSec_CAF1 16392 119 - 1 CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCGGAGGGGAAGU-GGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((...((..((((((.((((....)))).)))))).-.)).)))..)))).))))))))))).... ( -40.90) >DroSim_CAF1 1510 120 - 1 CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCGGAGGGGAAAAGGGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((.(((((.(((((((((....))))))))).)))))....)))..)))).))))))))))).... ( -40.20) >consensus CCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCGGAGGGGAAAA_GGGGGCGUGGACAAGGAAAACGGCGAGCA .(((((((..(((((....)))))((((((.....))..........((((..(((..((((.(((((((((....))))))))).)))).....)))..)))).))))))))))).... (-37.39 = -37.50 + 0.11)
| Location | 6,994,022 – 6,994,142 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -33.57 |
| Consensus MFE | -33.59 |
| Energy contribution | -33.70 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.50 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6994022 120 - 22224390 UACUUUUUACUUGGCCGCUAAAGCCGUCUCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUUGGGGGCG ............(((.((....)).))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) ( -29.80) >DroSec_CAF1 16431 120 - 1 UACUUUUUACUUGGCGGCUAAAGUCGUCGCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCG ............((((((....)))))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) ( -34.10) >DroSim_CAF1 1550 120 - 1 UACUUUUUACUUGGCGGCUAAAGCCGUCGCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCG ............((((((....)))))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) ( -36.80) >consensus UACUUUUUACUUGGCGGCUAAAGCCGUCGCGCCCUCUUGUCCGUCGUUGUUUUAAUAAAUUAAAUUCCGGAAAAUCCACAGGAAGUCUGUCUGUGCAUUUUUGCUUUCUGUUCGGGGGCG ............((((((....)))))).(((((((...((((..(((((((....))))..)))..))))......(((((((((.(((....))).....)))))))))..))))))) (-33.59 = -33.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:00 2006