Locus 2599

Sequence ID X_DroMel_CAF1
Location 6,948,708 – 6,948,802
Length 94
Max. P 0.852623
window4247

overview

Window 7

Location 6,948,708 – 6,948,802
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 78.87
Mean single sequence MFE -39.87
Consensus MFE -24.74
Energy contribution -24.25
Covariance contribution -0.49
Combinations/Pair 1.42
Mean z-score -1.91
Structure conservation index 0.62
SVM decision value 0.79
SVM RNA-class probability 0.852623
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6948708 94 + 22224390
GGAUUGCUGCCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUUGUCGCACGGUUCUGAAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCC
(((((((((((....))))).))))))....(((((((.....)))))))(((((((..((((.(((.((.....)).)))))))..))))))) ( -44.40)
>DroPse_CAF1 492 94 + 1
CGACUCCAGUCGAUCGGCGGCCAGUUUCCUGGUGCGGCUUGUCGUUGCACGGUUUACGAAGUUCCCCUCGGGAGCUGGCGCCUCUGGGGCGACA
((.((((((......((((.(((((((((..(((((((.....)))))))((...........))....))))))))))))).))))))))... ( -41.40)
>DroSec_CAF1 448 94 + 1
GGAUUGUUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUUGUCGCACGGUUCUGGAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCU
(((((((((((....))))).))))))....(((((((.....)))))))((((((((.((((.(((.((.....)).))))))).)))))))) ( -40.50)
>DroSim_CAF1 436 94 + 1
GGAUUGUUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUUGUCGCACGGUUCUGGAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCU
(((((((((((....))))).))))))....(((((((.....)))))))((((((((.((((.(((.((.....)).))))))).)))))))) ( -40.50)
>DroEre_CAF1 2595 94 + 1
GGAUUGCUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUCGUCGUCGCUCGGUUCUGGAAGAUCGUCUCGUGCUGCGUAGGAUCUGUCAGUGCC
(((((((((((....))))).))))))..((((((((....))).)))))(((.(((..(((((.(..((.....)).).)))))..))).))) ( -34.70)
>DroPer_CAF1 483 94 + 1
UGACUCCAGUCGAUCGGCGGCCAGUUUCCUGGUGCGGCUUGUCGUUGCACGGUUUACGAAGUUCCCCUCGGGAACUGGUGCCUCUGGGGCGACA
.(.((((((......((((.(((((((((..(((((((.....)))))))((...........))....))))))))))))).))))))).... ( -37.70)
>consensus
GGAUUGCUGUCGAUCGGCGGCCAGUUUUCGAGUGCGACUUGUCGUCGCACGGUUCUGGAAGAUCGUCUCGUGCUGCGUGGCAUCUGCCAGAGCA
.((((((((((....))))).))))).....(((((((.....)))))))(((((((..((........(((((....)))))))..))))))) (-24.74 = -24.25 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:42 2006