| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,939,651 – 6,939,839 |
| Length | 188 |
| Max. P | 0.981698 |
| Location | 6,939,651 – 6,939,771 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.48 |
| Mean single sequence MFE | -39.50 |
| Consensus MFE | -38.24 |
| Energy contribution | -38.30 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6939651 120 + 22224390 GGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGUACGGUCAUCAAAUUCGAGGGCUGCUCUUUUCCCAUGUACACAA ..((((((((((((((......)))))))))))......((.....((((............)))).((((((.((..(((((.((......)).)))))..))..)))))))).))).. ( -39.90) >DroSec_CAF1 24641 118 + 1 GGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGUACGGUCACCAAAUUCGAGGGCUGCUCUUUUCCCAUGUA--CAA (((..(((((((((((......))))))))))).......................((((..((.((((..(((((.....)))))..)))).))))))........))).....--... ( -39.60) >DroSim_CAF1 50806 118 + 1 GGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGUACGGUCACCAAAUUCGAGGGCUGCUCUUUUCCCAUGUA--CAA (((..(((((((((((......))))))))))).......................((((..((.((((..(((((.....)))))..)))).))))))........))).....--... ( -39.60) >DroEre_CAF1 33244 118 + 1 GGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACAUAAAAACCAGAAUAAAAGCCGGGUGGAAUGGGGUGGUAUGGUCACCAAAUUCGAGGGCUGCUCUUUUCCCAUGUA--CAA (((.((((((((((....(((..((..((.....))..))......((.(........).)))))((((..(((((.....)))))..))))..))))))))))...))).....--... ( -38.90) >consensus GGGUGGGGCGGCCUAAAUCGCAUUGGGUCGCUCAGAAACACAAAAACCAGAAUAAAAGCCGGCUGGAAUGGGGUGGUACGGUCACCAAAUUCGAGGGCUGCUCUUUUCCCAUGUA__CAA (((..(((((((((((......))))))))))).......................((((..((.((((..(((((.....)))))..)))).))))))........))).......... (-38.24 = -38.30 + 0.06)
| Location | 6,939,731 – 6,939,839 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.14 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -21.83 |
| Energy contribution | -23.45 |
| Covariance contribution | 1.62 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6939731 108 - 22224390 UAUUUCUGUACAUAUUUUCAUUUUCCUUCCCCUGGGCUUC------------UUUCUUUUUUUUCGGCAUUUGCUGUAUAUUGUGUACAUGGGAAAAGAGCAGCCCUCGAAUUUGAUGAC .................(((((....(((....(((((..------------...(((((((..((((....)))((((.....))))..)..))))))).)))))..)))...))))). ( -23.10) >DroSec_CAF1 24721 117 - 1 UAUUUCUGUACAUAUUUUCAUUUUCCUUC-CCUGGGCUUCUGUUUUCCUUUCUUUCUUUUUUUUCGGCAUUUGCUGUAUAUUG--UACAUGGGAAAAGAGCAGCCCUCGAAUUUGGUGAC .................(((((....(((-...(((((.((.(((((((...............((((....)))).......--.....))))))).)).)))))..)))...))))). ( -27.63) >DroSim_CAF1 50886 116 - 1 UAUUUCUGUACAUAUUUUCAUUUUCCUUC-CCUGGGCUUCUGUUUUCCUUUCUUUCUUU-UUUUCGGCAUUUGCUGUAUAUUG--UACAUGGGAAAAGAGCAGCCCUCGAAUUUGGUGAC .................(((((....(((-...(((((.((.(((((((..........-....((((....)))).......--.....))))))).)).)))))..)))...))))). ( -28.17) >DroEre_CAF1 33324 113 - 1 UAUGUCUCUACAUAUUUUCAUUUUCCUUC-CCUGGGCUUCUGUUUUCCUUU----CUUUUUUUUCGGCAUUUGUUGUAUAUUG--UACAUGGGAAAAGAGCAGCCCUCGAAUUUGGUGAC (((((....)))))...(((((....(((-...(((((.((.(((((((..----.........((((....)))).......--.....))))))).)).)))))..)))...))))). ( -27.50) >consensus UAUUUCUGUACAUAUUUUCAUUUUCCUUC_CCUGGGCUUCUGUUUUCCUUU_UUUCUUUUUUUUCGGCAUUUGCUGUAUAUUG__UACAUGGGAAAAGAGCAGCCCUCGAAUUUGGUGAC .................(((((....(((....(((((.((.(((((((...............((((....))))..............))))))).)).)))))..)))...))))). (-21.83 = -23.45 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:37 2006