Locus 2593

Sequence ID X_DroMel_CAF1
Location 6,934,158 – 6,934,254
Length 96
Max. P 0.917276
window4235

overview

Window 5

Location 6,934,158 – 6,934,254
Length 96
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 88.25
Mean single sequence MFE -18.16
Consensus MFE -15.74
Energy contribution -16.14
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.87
SVM decision value 1.11
SVM RNA-class probability 0.917276
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6934158 96 + 22224390
ACGAAAA----CAAAAGUGAGAUUAGGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAAUUUCGUGAGCUUGAUUUCAUUUUGCACAGUAAAAAAAUA
..((((.----....(((((((((.((.....)).))).))))))..((((.((((.........)))).)))).)))).((((((...))))))..... ( -19.40)
>DroSec_CAF1 19256 96 + 1
ACGAAAA----GAAAAGUGAGAUUAGGAAACCUCAAAUACUCGCUGGCAAGGUCACACCAAAUUCGUGAGCUUGAUUUCAUAUUGCACAGUAAAAAAAUA
..((((.----....((((((((((((...)))..))).))))))..((((.((((.........)))).)))).))))..................... ( -18.90)
>DroSim_CAF1 18106 96 + 1
ACGAAAA----GAAAAGUGAGAUUAGGAAACCUCAAAUACUCGCUGGCAAGGUCACACCAAAUUCGUGAGCUUGAUUUCAUAUUGCACAGUAAAAAAAUA
..((((.----....((((((((((((...)))..))).))))))..((((.((((.........)))).)))).))))..................... ( -18.90)
>DroEre_CAF1 27550 91 + 1
ACGAAAAA---AAAAAGUGAGACUGAGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAAUUUCAUGAGCUUGUUUUCAUUUUGCACAAUAAA------
..((((..---....((((((..((((....))))....)))))).(((((.(((...........))).)))))))))...............------ ( -19.10)
>DroYak_CAF1 20030 100 + 1
ACGAAAAAAAAAAAAAGUGAGACUCAGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAUAUUCAUGAGCUUGUUUUCAUUUUGCACAAUAAAAAAAUA
..((((.........((((((.....((....)).....)))))).(((((.(((...........))).)))))))))..................... ( -14.50)
>consensus
ACGAAAA____AAAAAGUGAGAUUAGGAAAUCUCAAAUACUCGCUGGCAAGGUCACACUAAAUUCGUGAGCUUGAUUUCAUUUUGCACAGUAAAAAAAUA
..((((.........((((((.....((....)).....))))))..((((.((((.........)))).)))).))))..................... (-15.74 = -16.14 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:31 2006