Locus 2589

Sequence ID X_DroMel_CAF1
Location 6,931,541 – 6,931,652
Length 111
Max. P 0.999323
window4230

overview

Window 0

Location 6,931,541 – 6,931,652
Length 111
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 94.95
Mean single sequence MFE -29.88
Consensus MFE -26.42
Energy contribution -27.22
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 0.88
SVM decision value 3.51
SVM RNA-class probability 0.999323
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6931541 111 + 22224390
CAAAUGCAUAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUC--AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGGAUUUGAUUUUUGAU-U
((((..((.((((.....(((((((((.((.((((((((((.--.......))))))))))))(..((((.....))))..)))))))))).....)))).))...))))..-. ( -29.30)
>DroSec_CAF1 16625 113 + 1
CAAAUGCAAAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUCACAUUGGUAAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUAGUAUUUGAUUUUUGAU-U
((((..(((((((.....(((((((((.((.((((((((((.((....)).))))))))))))(..((((.....))))..))))))))))....)).)))))...))))..-. ( -30.30)
>DroSim_CAF1 15221 113 + 1
CAAAUGCAAAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUCACAUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUUUUGAU-U
(((((((((.((......(((((((((.((.((((((((((.((....)).))))))))))))(..((((.....))))..)))))))))))).))))))))).........-. ( -32.40)
>DroEre_CAF1 24969 110 + 1
CAAAUGCAAAUCUCCCGAAAAAUCGUUACUUCAUUGAAUUUC--AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUUUUGAU--
(((((((((.((.(((...(((((...(((....((.....)--)..)))..)))))..))).(..((((.....))))..).........)).))))))))).........-- ( -27.30)
>DroYak_CAF1 17329 112 + 1
CAAAUGCAAAUCUCCCGAAAAAUCGUUAAUUCUUUGAAUUUC--AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUGUUGAUAU
(((((((((.((......(((((((((...(((((((((((.--.......))))))))))).(..((((.....))))..)))))))))))).)))))))))........... ( -30.10)
>consensus
CAAAUGCAAAUCUCGCGAAAAAUCGUUAGUUCUUUGAAUUUC__AUUGGUUAGAUUUAAGGGCGUGCUUGAAACUCGAGUGCAGCGAUUUUGAAUUGUAUUUGAUUUUUGAU_U
(((((((((.((......(((((((((...(((((((((((..........))))))))))).(..((((.....))))..)))))))))))).)))))))))........... (-26.42 = -27.22 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:27 2006