Locus 2586

Sequence ID X_DroMel_CAF1
Location 6,929,732 – 6,929,840
Length 108
Max. P 0.917885
window4225

overview

Window 5

Location 6,929,732 – 6,929,840
Length 108
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 75.34
Mean single sequence MFE -13.79
Consensus MFE -10.30
Energy contribution -10.47
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.75
SVM decision value 1.12
SVM RNA-class probability 0.917885
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6929732 108 - 22224390
ACAGAGGUAGAUCAAUUAAAUCACAGCAACGCUUCCAAAACUCGCAUCCCUAUUUCGAUGCUAAAAAGUUUAUCUGAAAUACAAAUAUCCAGAAACGA-------AUACAA----GAUG
......(((..(((..(((((...(((...)))..........(((((........)))))......)))))..)))..)))................-------......----.... ( -12.00)
>DroPse_CAF1 14670 108 - 1
ACAGAGGUAGAUUAAUAAAGUCACAGCAACGCUUCCAAAAAACGCAUCCCUAUUUCGAUGCGCAAAAGUUUAUCUAAAAAAAAAA--GCAAAGAAGGAACCAUCAACACA---------
...(((((.((((.....))))...........(((......((((((........)))))).....((((............))--))......)))))).))......--------- ( -16.00)
>DroWil_CAF1 18621 98 - 1
AUAGAGGUAGAUCAUUAAAAUCACAGCAACGCUUCCAAAAAACGCAUCCAUAUUUUGAUGCGCAAAAGUUUAUCUAAAAAAAAA----------CACA-------ACACAA----CAAC
....((((((((............(((...))).........((((((........)))))).....)))))))).........----------....-------......----.... ( -12.70)
>DroMoj_CAF1 18344 96 - 1
ACAGAGGUAGAUCAUUAAAAUCACAACAGCGCUUCCAAAAAACGCAUCCCUACUUUGAUGCACAAAAGUUUAUCUAAAACAAA------------AGA-------AAACAA----AACU
...(((((......................)))))........(((((........)))))......((((.(((........------------)))-------))))..----.... ( -10.15)
>DroAna_CAF1 13791 102 - 1
ACAGAGGUAGAUCAAUAAAAUCACAGCAACGCUUCCAAAAAUCGCAUCCCUAUUUCGAUGCGAAAAAGUUUAUCUAA----------UCGAGAACAGA-------AUACAGAGAAAAAA
...((..(((((.(((........(((...)))........(((((((........)))))))....))).))))).----------)).........-------.............. ( -15.20)
>DroPer_CAF1 14691 112 - 1
ACAGAGGUAGAUUAAUAAAGUCACAGCAACGCUUCCAAAAAACGCAUCCCUAUUUCGAUGCGCAAAAGUUUAUCUAAAAA-AAAA--GCAAAGAAGGAACCAUCAACACAA----CCAC
.....(((.((((.....))))........(.((((......((((((........)))))).....((((.........-..))--))......)))).).........)----)).. ( -16.70)
>consensus
ACAGAGGUAGAUCAAUAAAAUCACAGCAACGCUUCCAAAAAACGCAUCCCUAUUUCGAUGCGCAAAAGUUUAUCUAAAAAAAAA____C_A__AAAGA_______ACACAA____AAAC
....((((((((............(((...)))..........(((((........)))))......))))))))............................................ (-10.30 = -10.47 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:22 2006