| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 860,171 – 860,267 |
| Length | 96 |
| Max. P | 0.605626 |
| Location | 860,171 – 860,267 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 70.92 |
| Mean single sequence MFE | -28.96 |
| Consensus MFE | -12.19 |
| Energy contribution | -14.44 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 860171 96 + 22224390 ---GGGGCAACAAGCAUAAGCCAUGUCUGGAUUCCGCUAGAGC--UGCACCGGAAUGGCAACUGAGUCUAGGGGUCAGAAAUCUGGACUGGGGCUCAUUAU ---.((((...........(((((.(((((...(.((....))--.)..))))))))))..((.((((((((.........)))))))).))))))..... ( -32.90) >DroSec_CAF1 63008 96 + 1 ---GGGGCAACAAGCAUAAGCCAUGUCUGGAUUCCGCUGGAGC--UGCACUGGAAUGGCAACUGAGUCCAGGGGUCAGAAAUCUGGACUGGGGCUCAUUAU ---.((((...........(((((.((..(...(.((....))--.)..)..)))))))..((.((((((((.........)))))))).))))))..... ( -32.60) >DroSim_CAF1 59195 98 + 1 ---GGGGCAACAAGCAUAAGCCAUGUCUGGAUUCCGCUGGAGGAAUCCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ---(((((...........))).....((((((((......)))))))))).................................................. ( -17.90) >DroEre_CAF1 66199 96 + 1 ---GGGGCAACAAGCAUAAGCCAUGUCUGGAUUCCGGUGGAGC--UGGACUGGAAUGGCAACUGAGUCUAGGGGUCAGAAAUCUGGACUGGUGCUCAUUAU ---.((((...........(((((.((..(..(((((.....)--)))))..))))))).(((.((((((((.........)))))))))))))))..... ( -33.70) >DroYak_CAF1 62441 94 + 1 UUUGGGGCGACAAGCAUAAGCCAUGUCUGGAUUCCGGUGGAGC--UGAACUGGAAUGGCAACAGA-----GGGGUCAGAAAUCUGUACUGCUGCUCAUUAU ..((..((((((.((....))..))))...((((((((.....--...)))))))).))..))((-----(.((((((....)))....))).)))..... ( -27.70) >consensus ___GGGGCAACAAGCAUAAGCCAUGUCUGGAUUCCGCUGGAGC__UGCACUGGAAUGGCAACUGAGUC_AGGGGUCAGAAAUCUGGACUGGGGCUCAUUAU ...((((...((..(((.....)))..))..))))....((((......(((((.((((..(((....)))..))))....)))))......))))..... (-12.19 = -14.44 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:09 2006