Locus 2576

Sequence ID X_DroMel_CAF1
Location 6,905,200 – 6,905,319
Length 119
Max. P 0.975921
window4208

overview

Window 8

Location 6,905,200 – 6,905,319
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.43
Mean single sequence MFE -24.10
Consensus MFE -18.44
Energy contribution -19.32
Covariance contribution 0.87
Combinations/Pair 1.15
Mean z-score -2.27
Structure conservation index 0.77
SVM decision value 1.76
SVM RNA-class probability 0.975921
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6905200 119 + 22224390
GACACAGAGACACAGACACUUUAAAUAAUUAAGCACUCGA-AGGGGAUUCCUAAAUUAUCAGAGAUCUUCAAGUAGAACUGUCAGUGCUUAAUUAAAUUUGAAGAAGCUAAACAGAUUUG
.............((...(((((((((((((((((((.((-.((((((..((........))..)))))).((.....)).))))))))))))))..)))))))...))........... ( -26.10)
>DroSec_CAF1 29612 111 + 1
--------GACACAGACACUUUAAAUAAUUAAGCACUCAA-AGGGGAUUCCUAAAUUAUCACAGAUCUCCAAGUAGAUCUGUCUGUGCUUAAUUAAAUUUGAAGGAGCUAAACAGAUUCG
--------.....((...((((((((((((((((((....-.(((....)))........((((((((......))))))))..)))))))))))..)))))))...))........... ( -29.30)
>DroEre_CAF1 28701 108 + 1
--------GACA---GCACUUUAAAUAAAAAUGCACUCAAAAGGGGAUUCUUAAAUUAUCACGGAUCUCCAAGUAGAUGUUUCAGUUC-UAAUCAAAUUAGAAGGAGCUAAUCAGUUUUG
--------....---(((.(((.....))).)))...(((((((((((((............)))))))).....((((((((..(((-((((...))))))))))))..)))..))))) ( -20.20)
>DroYak_CAF1 33298 108 + 1
--------GACA---ACACUUUAAAUAAUUAAGCACUCAA-AGCGGAUUCUUAAAUUAUCACAAAUCUGCAAGCAGAUCUUUCAGUGCUUAAUUUAAUUUACAGCAGCUACAGAGAUUUA
--------....---...((.((((((((((((((((.((-((..(((.........)))....(((((....))))))))).)))))))))))..))))).))................ ( -20.80)
>consensus
________GACA___ACACUUUAAAUAAUUAAGCACUCAA_AGGGGAUUCCUAAAUUAUCACAGAUCUCCAAGUAGAUCUGUCAGUGCUUAAUUAAAUUUGAAGGAGCUAAACAGAUUUG
..................((((((((((((((((((......(((((((..............))))))).....((....)).))))))))))..))))))))................ (-18.44 = -19.32 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:07 2006