| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 859,228 – 859,336 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 859,228 – 859,336 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 86.13 |
| Mean single sequence MFE | -31.13 |
| Consensus MFE | -23.42 |
| Energy contribution | -23.14 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 859228 108 + 22224390 CUGCACUGGAGUCGGAAAACAAAACAUUGUGUGUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU-GUCCAUGGUGCACGGUGGAAU---- .((((.((((((((((..((((....))))...)))..)))..)))).))))..............((((((((((((.(((.(...-..).))).))).)))))))))---- ( -29.20) >DroSec_CAF1 62061 108 + 1 CUGCACUGGAGUCGGAAAACAAAACACUGUGUAUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU-GUCCAUGGUGCACGGUGGAAU---- (((.((....))))).........(((((((((.((((((((....(((((.....(((.....)))........)))))......)-).)))))))))))))))....---- ( -31.32) >DroSim_CAF1 58245 112 + 1 CUGCACUGGAGUCGGAAAACAAAACACUGUGUAUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU-GUCCAUGGUGCACGGUGGAAUGUGG (((.((....)))))...(((...(((((((((.((((((((....(((((.....(((.....)))........)))))......)-).)))))))))))))))...))).. ( -32.72) >DroEre_CAF1 65266 109 + 1 CUGCACUAAAGUCUGAAAACAAAGCAUUGUGCAUCCAUGGCUGUUGGGCGCACAAUCAAUUACUUUGUUCCACCGUCAACAUUGUGUUGUCCAUGGUGCACGGUGGAAU---- ..................((((((.(((((((..(((.......)))..)))))))......))))))((((((((...(((..((.....))..))).))))))))..---- ( -34.20) >DroYak_CAF1 61477 98 + 1 CUGCUCUGAAGUCUGAAAACAAAACAUUUUGUAUUCAUGGCAGC-----------UCAAUUACUUUGUUCCACCAUCAGCAUUGUGUUGCCCAUGGUGCACGGUGGAAU---- ..(((.....(((((((.(((((....))))).)))).))))))-----------...........((((((((....((((..((.....))..))))..))))))))---- ( -28.20) >consensus CUGCACUGGAGUCGGAAAACAAAACAUUGUGUAUCCAUGGCAGUUCGUUGCACAAUCAAUUACUUUGUUCCAUCGGCAACAUUGUGU_GUCCAUGGUGCACGGUGGAAU____ ........................(((((((((.(((((((.((.....)).........(((..((((........))))..)))..).)))))))))))))))........ (-23.42 = -23.14 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:07 2006