Locus 2551

Sequence ID X_DroMel_CAF1
Location 6,842,205 – 6,842,323
Length 118
Max. P 0.555068
window4163

overview

Window 3

Location 6,842,205 – 6,842,323
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.79
Mean single sequence MFE -36.86
Consensus MFE -24.94
Energy contribution -26.38
Covariance contribution 1.44
Combinations/Pair 1.15
Mean z-score -1.96
Structure conservation index 0.68
SVM decision value 0.04
SVM RNA-class probability 0.555068
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6842205 118 + 22224390
UAGCCUCGAAAAGUGAUGUCUGCCGAGUGGGACCUUCAGACAUCCCCAAUGUCCGAUCAUAUCAGGCCCGAGAUCUACG-AUCUGGUGUUAUAACACCAACGGCAAGCACUUCGGUUC-C
.......(((..(...((..(((((..((((.(((((.(((((.....))))).)).......)))))))(((((...)-))))(((((....)))))..)))))..))...)..)))-. ( -35.11)
>DroSec_CAF1 22218 118 + 1
UGGCCUCGAAAUGUGAUGUCUGCCAAGUGGGACCUUCAGACAUCCCCAAUGACCGAUCAUAUCAGGGCCAAGAUCUACG-AUCUGGUGUUAUAACACCAACGGCAAGCAUUUCGGUUC-C
.((..(((((((((((((((((..(((......)))))))))))((..((((....))))....))(((.(((((...)-))))(((((....)))))...)))..)))))))))..)-) ( -37.60)
>DroSim_CAF1 22257 118 + 1
UGGCCUCGAAAUGUGAUGUCUGCCAAGUGGGACCUUCAGACACCUCCAAUGUCCGAUCAUAUCAGGCCCAAGAUCUACG-AUCUGGUGUUAUAACACCAACGGCAAGCAUUUCGGUUC-C
.((..(((((((((......((((...((((.(((((.((((.......)))).)).......)))))))(((((...)-))))(((((....)))))...)))).)))))))))..)-) ( -36.81)
>DroEre_CAF1 22577 117 + 1
UAGCAUCGAACCGUGAAGUCUGCCAAGUGGGACCUUCAGACAUCCCCAAUGUCCGACCAUAUCA---CCCAGAUCUACGAAUCUGGUGUUAUAACACCCACGGCAAGCAGUUCGGUUCCC
.......((((((....(..((((..(((((....((.(((((.....))))).))...(((.(---(((((((......)))))).)).)))...)))))))))..)....)))))).. ( -39.20)
>DroYak_CAF1 23024 116 + 1
UAGCCUCGAAAUGCGAAGUCUGGCAAGUGGGACGUCUGAAGGUCCCCAAUGUCCGACCAUAUCA---UCCAGAUCUACG-AUCUGGUGUUAUAACACCCACGGCAGGCAGUUCGGUUCCC
.(((((((.....))).(((((.(..(((((.........((((..........))))(((.((---.(((((((...)-)))))))).)))....)))))).))))).....))))... ( -35.60)
>consensus
UAGCCUCGAAAUGUGAUGUCUGCCAAGUGGGACCUUCAGACAUCCCCAAUGUCCGAUCAUAUCAGG_CCAAGAUCUACG_AUCUGGUGUUAUAACACCAACGGCAAGCAGUUCGGUUC_C
.....(((((((((((((((((..(((......))))))))))).....((.(((...............((((......))))(((((....)))))..))))).)))))))))..... (-24.94 = -26.38 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:27 2006