| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 858,763 – 858,857 |
| Length | 94 |
| Max. P | 0.917798 |
| Location | 858,763 – 858,857 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 77.72 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -16.55 |
| Energy contribution | -16.55 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.917798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 858763 94 + 22224390 CCAUGGCCCAUUCCCCAUUUCCCAUUUCUCUUAUUUAUGGUUCGGGCCGAAAGGCGCCAUUUUCAUAAAAGCGAGUAUAAGUGUGGGCGUGUUU .((((.((((.....(((((.....(((.(((..((((((...(((((....))).))....))))))))).)))...)))))))))))))... ( -26.10) >DroSec_CAF1 61608 73 + 1 CCAU---------------------UUUCCUUAUUUAUGGUUCGGGCCGAAAGGCGCCAUUUUCAUAAAAGCGAGUAUAAGUGUGGGUGUGUUU .(((---------------------..(((.((((((((....(((((....))).))...(((........))))))))))).))).)))... ( -18.90) >DroSim_CAF1 57770 94 + 1 CCAUUUCCCAUUUCCCAUUCCCCAUUUCCCUUAUUUAUGGUUCGGGCCGAAAGGCGCCAUUUUCAUAAAAGCGAGUAUAAGUGUGGGUGUGUUU ...............(((.((((((((..(((.(((((((...(((((....))).))....)))))))...)))...))))).))).)))... ( -24.90) >DroEre_CAF1 61543 73 + 1 CCAU---------------------UUCCCUUAUUUAUGGUUCGGGCCGAAAGGCGCCAUUUUCAUAAAACCGUCUGUUGGUGUGGGUGUGGGU ((((---------------------..(((...(((((((...(((((....))).))....)))))))((((.....))))..))).)))).. ( -27.00) >consensus CCAU_____________________UUCCCUUAUUUAUGGUUCGGGCCGAAAGGCGCCAUUUUCAUAAAAGCGAGUAUAAGUGUGGGUGUGUUU ...........................(((.((((((((....(((((....))).))...(((........))))))))))).)))....... (-16.55 = -16.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:06 2006