Locus 2541

Sequence ID	X_DroMel_CAF1
Location	6,805,529 – 6,805,643
Length	114
Max. P	0.965282

overview

Window 8

Location	6,805,529 – 6,805,643
Length	114
Sequences	4
Columns	116
Reading direction	forward
Mean pairwise identity	81.74
Mean single sequence MFE	-38.67
Consensus MFE	-26.59
Energy contribution	-27.90
Covariance contribution	1.31
Combinations/Pair	1.09
Mean z-score	-2.41
Structure conservation index	0.69
SVM decision value	1.58
SVM RNA-class probability	0.965282
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6805529 114 + 22224390
ACCAAGGAUGAAGGAUGCCAGACUCGGGGAGCCAGGUGCGCUUCUCACCUGUCAUUUACAAA--GGGAAGUGAGUCAGCCAUCCAGUCCGGCAUCCAGGCAUCCUGCCAUCCGGAU
.((..(((((.((((((((.(((((((((((((....).))))))).(((...........)--)).....))))).(((.........))).....))))))))..))))))).. ( -48.00)
>DroSec_CAF1 74716 114 + 1
ACCAAGGAUGAAGGAUGCCCGGCUCGAGGAGCCAGGUGCGCUUCUCACCUGUCAUUUACAAA--GGGAAGUGAGUCAGCCAUCCAGUCAGGCAUCCAGGCAUCCUGCCAUCCGGAU
.((..(((((.((((((((.(((((((((((((....).))))))).(((...........)--)).....))))).(((.........))).....))))))))..))))))).. ( -47.50)
>DroEre_CAF1 20405 92 + 1
ACCAAGAAUGAAUGAUGCC--------------AGCUGCGCUUCUCACCUGUCAUUUACAAA--GGGAAGUGAGUCAGCCAUCCAGUCA--------GGCAUCCUGCCAUCCGGAU
.((.....(((..(((((.--------------.(((.((((((((...(((.....)))..--)))))))))))..).))))...)))--------(((.....)))....)).. ( -25.80)
>DroYak_CAF1 67488 94 + 1
ACCAAGAAUGAGGGAUGUC--------------AGGUGCGCUUCUCACCUGUCAUUUGCAAAAGGGGAAGUGAGUCAGGCAUCCAGUCA--------GGCAUCCUGCCAUCCGGAU
.((.....(((.(((((((--------------.((..((((((((...(((.....)))....))))))))..)).)))))))..)))--------(((.....)))....)).. ( -33.40)
>consensus
ACCAAGAAUGAAGGAUGCC______________AGGUGCGCUUCUCACCUGUCAUUUACAAA__GGGAAGUGAGUCAGCCAUCCAGUCA________GGCAUCCUGCCAUCCGGAU
.((..(((((.((((((((.(((((...))))).((..((((((((...(((.....)))....))))))))..)).....................))))))))..))))))).. (-26.59 = -27.90 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:14 2006