Locus 2536

Sequence ID X_DroMel_CAF1
Location 6,768,371 – 6,768,464
Length 93
Max. P 0.505157
window4142

overview

Window 2

Location 6,768,371 – 6,768,464
Length 93
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.45
Mean single sequence MFE -39.43
Consensus MFE -21.81
Energy contribution -21.70
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.06
Structure conservation index 0.55
SVM decision value -0.06
SVM RNA-class probability 0.505157
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6768371 93 - 22224390
CAAGUUGCUGGUUGCCAGUUGCUG-GUUGCC--------------------------GGCUGCUGAUGUUGCUGUAAUGCCGUAAGCUUAUAGGGCUUUAGUGGCGCUUAUCACAUGCCA
..(((.((((((.(((((...)))-)).)))--------------------------))).)))...((..(((....(((.((......)).)))..)))..))((.........)).. ( -32.20)
>DroEre_CAF1 57164 108 - 1
CAAGUUGCUGGUUGCCAGUUGCUG-GUUGCC-----------AGUUGCUGGUUGCCAGGCUGCUGAUGUUGCUGUAAUGGCGUAAGCUUAUGGGGCUUUAGUGGCGCUUAUCACAUGCCA
.((((..(((((.((((((.((((-(...))-----------))).)))))).)))))((..((((....(((.((..(((....)))..)).))).))))..))))))........... ( -45.60)
>DroAna_CAF1 72486 120 - 1
CAAGUUGCUGGUUGCAAGUUCCAGAGUUGCCUGGAUUGCCUGGGUUGCCUGGUUUCUGGCCGCUGAUGUUGCUGUAAUGCCGCAAGCUUAUAGGGCUUUAGUGGCGCUUAUCACAUGCCA
.....((.((((.((.((..((((.((.(((..(.....)..))).))))))...)).((((((((.(((.((((((.(.(....))))))))))).))))))))))..))))))..... ( -40.50)
>consensus
CAAGUUGCUGGUUGCCAGUUGCUG_GUUGCC____________GUUGC__G_U__C_GGCUGCUGAUGUUGCUGUAAUGCCGUAAGCUUAUAGGGCUUUAGUGGCGCUUAUCACAUGCCA
...(..(((((...)))))..)....................................((((((((.(((.((((((.(.(....))))))))))).))))))))((.........)).. (-21.81 = -21.70 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:08 2006