Locus 2526

Sequence ID X_DroMel_CAF1
Location 6,731,741 – 6,731,857
Length 116
Max. P 0.500000
window4124

overview

Window 4

Location 6,731,741 – 6,731,857
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.13
Mean single sequence MFE -24.90
Consensus MFE -14.79
Energy contribution -15.10
Covariance contribution 0.31
Combinations/Pair 1.13
Mean z-score -1.69
Structure conservation index 0.59
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6731741 116 - 22224390
GGUGUCCUGUCAUUUCAUAG--UUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGAG-AAAAGUUUCUUGUUGUCGUUGC-AGCGAUAUAAAA
.(((((((((.....(((((--......((((((((((.(((.....))).))))))))))......)))))...((((((...-...))))))...........))-)).))))).... ( -27.50)
>DroPse_CAF1 75448 107 - 1
----UCCUGACGUUUUAUAG--UUU----UAUGAAUUACUGCAAAAUGCAAUAAUUUAUGCAAGUGUUUGUGUACGAAAC--AG-AAAAGUUUCUUGUUAUUGCUUCAAGCGUUAUAAAA
----...((((((((...((--(..----.((((((((.(((.....))).))))))))(((((..(((.(((.....))--).-))).....)))))....)))..))))))))..... ( -22.10)
>DroEre_CAF1 22741 116 - 1
GGUGUCCUGUCAUUUCAUAG--UUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGAG-AAAAGUUUCUUGUUGCCGUUGC-AGCGAUAUAAAA
.(((.((((..(((....))--)..)))))))..((..((((((...(((((((..(((((((....))))))).((((((...-...)))))))))))))..))))-))..))...... ( -29.40)
>DroYak_CAF1 28691 116 - 1
GGUGUCCUGUCAUUUCAUAG--UUCCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUUAACGAAACUGAG-AAAAGUUUCUUGUUGUCGUUGC-AGCGAUAUAAAA
.(((((((((..........--......((((((((((.(((.....))).))))))))))...........((((((((.(((-((....)))))))).)))))))-)).))))).... ( -26.50)
>DroAna_CAF1 21322 105 - 1
AGUGUUUUGUCAUUUCGUAAGUUUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGUGGAAAAGUUUU---------------GGGCUCAAAAA
............................((((((((((.(((.....))).)))))))))).....((((.(..(((((((.......))))))---------------)..).)))).. ( -21.80)
>DroPer_CAF1 37551 107 - 1
----UCCUGACGUUUUAUAG--UUU----UAUGAAUUACUGCAAAAUGCAAUAAUUUAUGCAAGUGUUUGUGUACGAAAC--AG-AAAAGUUUCUUGUUAUUGCUUCAAGCGUUAUAAAA
----...((((((((...((--(..----.((((((((.(((.....))).))))))))(((((..(((.(((.....))--).-))).....)))))....)))..))))))))..... ( -22.10)
>consensus
GGUGUCCUGUCAUUUCAUAG__UUUCAGGUAUGAAUUACUGCAAAUUGUAAUAAUUUAUGCAAUUAUUUGUGUACGAAACUGAG_AAAAGUUUCUUGUUGUCGUUGC_AGCGAUAUAAAA
.......((((.................((((((((((.(((.....))).))))))))))..............((((((.......)))))).................))))..... (-14.79 = -15.10 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:53 2006