Locus 2525

Sequence ID X_DroMel_CAF1
Location 6,728,674 – 6,728,773
Length 99
Max. P 0.550748
window4123

overview

Window 3

Location 6,728,674 – 6,728,773
Length 99
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 96.98
Mean single sequence MFE -30.38
Consensus MFE -25.92
Energy contribution -26.30
Covariance contribution 0.38
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.85
SVM decision value 0.03
SVM RNA-class probability 0.550748
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6728674 99 + 22224390
CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGA-GACGAAAAAGCGAAGGACACAAGUGAUUGACA
...(((((((((((((((((((((.(.((((((....((((.(((........))).))))))))))-.))))))....)))))).))))))..)))).. ( -28.80)
>DroSec_CAF1 13914 99 + 1
CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGA-GACGAAAAAGCGAAGGACACAAGUGAUUGACA
...(((((((((((((((((((((.(.((((((....((((.(((........))).))))))))))-.))))))....)))))).))))))..)))).. ( -28.80)
>DroEre_CAF1 19673 99 + 1
CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGCUGGA-GACGAAAAAGCGAAGGACACAAGUGAUUGACA
...((((((((((((((....(((((((((...(((.((((.(((........))).)))).))).)-))).....))))))))).))))))..)))).. ( -30.20)
>DroYak_CAF1 20604 100 + 1
CCUUCGCAUUUGCUCCUUUUUUCGCCGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGAGGACGAAGAAGCGAAGGACACAAGUGAUUGACA
(((((((..........(((((((((.((((((....((((.(((........))).)))))))))))).))))))))))))))...(((....)))... ( -33.70)
>consensus
CCUUCGAAUUUGUUCCUUUUUUCGCUGUCUAAUUAGAGGCUGACUAAUUGAUGAGUGGGCCGUUGGA_GACGAAAAAGCGAAGGACACAAGUGAUUGACA
...(((((((((((((((((((((.(.((((((....((((.(((........))).)))))))))).).)))))....)))))).))))))..)))).. (-25.92 = -26.30 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:52 2006