Locus 2524

Sequence ID X_DroMel_CAF1
Location 6,709,091 – 6,709,187
Length 96
Max. P 0.710927
window4122

overview

Window 2

Location 6,709,091 – 6,709,187
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -26.67
Consensus MFE -25.27
Energy contribution -25.17
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.95
SVM decision value 0.38
SVM RNA-class probability 0.710927
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6709091 96 + 22224390
AAGCCUAAUUGACCUCUUGGACAUUGGCAAAGGUGUAAGCCAUGUGCAGAGAGAUCGAAGCCGAAGGGAGACCAGUGAGGACAUUGGAGAAGGAGC
...(((..((((.((((((.((((.(((..........))))))).)).)))).))))..((....))...((((((....))))))...)))... ( -28.70)
>DroSec_CAF1 11544 96 + 1
AAGCCUAAUUGACCUCUUGGACAUUAGCAAAGGUGUAAGCCAUGUGUAGAGGGAUCGAAGCCGAAGGGAGACCAGUGAAGACAUUGGAGAAGGAGC
...(((..((((((..(((.((((.......(((....))))))).)))..)).))))..((....))...((((((....))))))...)))... ( -23.41)
>DroSim_CAF1 13118 96 + 1
AAGCCUAAUUGACCUCUUGGACAUUGGCAAAGGUGUAAGCCAUGUGUAGAGGGAUCGAAGCCGAAGGGAGACCAGUGAGGACAUUGGAGAAGGAGC
...(((..((((.(((((..((((((((..........)))).)))).))))).))))..((....))...((((((....))))))...)))... ( -27.90)
>consensus
AAGCCUAAUUGACCUCUUGGACAUUGGCAAAGGUGUAAGCCAUGUGUAGAGGGAUCGAAGCCGAAGGGAGACCAGUGAGGACAUUGGAGAAGGAGC
...(((..((((.((((((.((((.(((..........))))))).)).)))).))))..((....))...((((((....))))))...)))... (-25.27 = -25.17 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:51 2006