Locus 2513

Sequence ID X_DroMel_CAF1
Location 6,683,759 – 6,683,849
Length 90
Max. P 0.535378
window4106

overview

Window 6

Location 6,683,759 – 6,683,849
Length 90
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 84.50
Mean single sequence MFE -18.22
Consensus MFE -11.98
Energy contribution -14.40
Covariance contribution 2.42
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.66
SVM decision value 0.00
SVM RNA-class probability 0.535378
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6683759 90 + 22224390
UCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUAUUGUAUAUAUAUCCUAUAUAUG-AUAUAUAUGCAUGGUGUAUGGGGUGUAUA
.......(((......))).......((((.(((((((((((((((((((((........)-)))))))))))..))))))))).)))).. ( -22.60)
>DroSec_CAF1 13510 89 + 1
CCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUA-UGUAUAUAUAUCCUAUAUAUG-AUAUAUACGCAUGGUGUAUGGGGUGUAUA
.......(((......)))(((((...............-)))))(((((((((((((((.-((........)).))))))))))))))). ( -18.56)
>DroEre_CAF1 13309 75 + 1
CCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUA-UAUAUA---------------UCUAUAUAUGCAUGGUGUAUGGGGUGUAUA
...(((((.(.((((((.....)...(((.((.((((((-((....---------------..)))))))).)).)))))))).)))))). ( -13.50)
>consensus
CCAAUGCAACGCUAUAGUUAUACAGUUACAAUUCAUAUA_UGUAUAUAUAUCCUAUAUAUG_AUAUAUAUGCAUGGUGUAUGGGGUGUAUA
.......(((......))).......((((.((((((((.(((((((((((.(.......).)))))))))))...)))))))).)))).. (-11.98 = -14.40 +   2.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:36 2006